Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCAGAGTCCCAGCCAGCGCTCCTCCGCCATGATCCAGGCGGTGATGGTGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaaccctctcctctcttctctacaggtgtcacctagtcccctctctttcttcaccacccaccaattgctcgatcaatttccccacccggatcaactactgcttcatccatggaccctttcttgctcgagcaattacttcagcgaagcaaatattcttgccttaattcatttacttcctcgttctatggtcgcag

Basic information

species Zea mays
transcript GRMZM2G177914_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177914_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g12710.1 (Oryza sativa), 5'ss of exon 2
-CTGCCAGAGTCCCAGCCAGCGCTCCTCCGCCATGATCCAGGCGGTGATGGTGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaaccctctcctctcttctctacaggtgtcacctagtcccctctctttcttcaccacccaccaattgctcgatcaatttccccacccg-gatcaactactgcttcatccatggaccctttcttgctcgagcaatt-acttcagcgaagcaaatattcttgccttaattcatttacttcctcgttctatggtcgcag
   ||  |  ||     || | | | || |||||||||||||| ||||||||||| ||||| |||| |||||| ||||| |||||||||||||| | ||||||| | |  |  | ||  ||               ||| |  ||||||   |  |   ||||||  ||| |||| | |||||||||||||||  || |||   | ||||     || |||    |  |  | || || ||  ||    |     |  ||||||   ||| ||  |||   |      | |           
TTCGCTCGCCTCTTCCTCATC-CCCATCAGCCATGATCCAGGCCGTGATGGTGATGAGCACGCAGGGCAAGCCGCGCCTCCTCAAGTTCTACAGCTACCAGgtttcgattctaccccgttc---------------accca--cccctccaatcttcgcccacccgacaagtgctgggtcaatttccccacccaagaccaatagcagcttacgtgattgacgaaatgct-tttgaccactttgctctccccttctatctattctctgcttcatggattggttattggatgcag---------

upper sequence: GRMZM2G177914_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g25110.1 (Oryza sativa), 5'ss of exon 1
CTGCCAGAGTCCCAGCCAGCGCTCCTCCGCCATGATCCAGGCGGTGATGGTGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaaccctctcctctcttctctacaggtgtcacctagtcccctctctttcttcaccacccaccaattgctcgatcaatttccccacccggatcaactactgcttcatccatggaccctttcttgctcgagcaattacttcagcgaagcaaatattcttgccttaattcatttacttcctcgttctatggtcgcag------
                               ||||||||||| |||||||| || ||||| |||| |||||| ||||| |||||||||||||| | ||| ||| | |  |  | ||  |              |||||   |||||||   |  |   ||||||  ||| |||| | |||||||||||||||    | | ||     | |   | |      |  ||| | ||  || | |||  |   |        || | | |  ||   ||  ||   ||      ||||    |      
-------------------------------ATGATCCAGGCCGTGATGGTCATGAGCACGCAGGGCAAGCCGCGCCTCCTCAAGTTCTACAGCTACCATgtttcgattctacccccat--------------tcacc--atcccctccaatcttcgcccacccgacaagtgctggctcaatttccccacccaagaccaatagcagcttagttacg------tgattgatggatgaaatgcttttgaccactttgctctcct-cttctatctgttctctgtttcacggattggttattgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211467101|gb|FK972980.1|FK972980
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211469618|gb|FK972985.1|FK972985
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|19822213|gb|BQ048237.1|BQ048237
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211469620|gb|FK972987.1|FK972987
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211467096|gb|FK972975.1|FK972975
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211469627|gb|FK972994.1|FK972994
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211469622|gb|FK972989.1|FK972989
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTC-GCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|149090359|gb|EE179665.2|EE179665
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211467090|gb|FK972969.1|FK972969
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211469619|gb|FK972986.1|FK972986
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211467098|gb|FK972977.1|FK972977
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211467097|gb|FK972976.1|FK972976
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTC-GCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211467089|gb|FK972968.1|FK972968
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTC-GCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|5499044|gb|AI854911.1|AI854911
EST:     TGATCAGCACCCAGGCCATGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCGGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211472147|gb|FK972996.1|FK972996
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211472153|gb|FK973002.1|FK973002
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211472152|gb|FK973001.1|FK973001
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211472150|gb|FK972999.1|FK972999
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211467094|gb|FK972973.1|FK972973
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|26455836|gb|CA827419.1|CA827419
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211467100|gb|FK972979.1|FK972979
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211469628|gb|FK972995.1|FK972995
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211467088|gb|FK972967.1|FK972967
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211469626|gb|FK972993.1|FK972993
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|149073163|gb|EE161440.2|EE161440
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|211469614|gb|FK972981.1|FK972981
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
EST: gi|71429421|gb|DR810471.1|DR810471
EST:     TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAG                         CCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT
genomic: TGATCAGCACCCAGGCCAAGCCCCGCCTTCTCAAGTTCTACAGTTTCCAGgttccaaacc ... atggtcgcagCCACCCGAGAAGCATCAGGACCTCGTCCGCTGTGTCTTCCAAT