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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaattcttgctccttcgattcgtctccaccccttccccgttctgattttgtaaggctgtggaaattagcgatgctaacttctgtaagactggtgt...

Basic information

species Zea mays
transcript GRMZM2G177654_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177654_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g27090.1 (Oryza sativa), 5'ss of exon 1
GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt---cttgctccttcgattcgtctccaccccttc---cccgttctgattttgtaaggctgtggaaattagcgatgctaacttctgtaagactggtgt
 ||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| ||||| ||   |||   ||| ||||| |||||||||||| ||||     ||  |  || |  | |  |||   |  ||    |   ||    |||| | |  |  ||   ||| | ||||| | | | || |   ||     
CGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGgtcggtaaccgagctcccctctccactccccctctctctgtttcagcttttttctttttttttaatccatgctgatttgtgatgcgagcatttg-atttct-----

upper sequence: GRMZM2G177654_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT3G18880.1 (Arabidopsis thaliana), 5'ss of exon 1
GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaattcttgctccttcga--ttcgtctccaccccttccccgttctga---ttttgtaaggctgtggaaattagcgatgctaacttctgtaag---actggtgt--------------------------------------------------------
 ||| | ||||||||||| ||  | ||||| || || |||||||| || |||||||||||||| ||||| ||  | |||||||| ||||| ||||| || || | |    |||  |  || ||  ||  | | ||     ||        ||   ||| |  | ||| | | |||    ||    |||   || |||   ||| |  |                                                        
CGACAGACTCTTCCACAATAATATCTACAATCGATATGTCAAGCGTACTTCCAAGTTCATGGCTCACGATGAAAAGGACTCCTGTAACATCGGCGATCGAgtattttccccttcattttttgaatttgatatacatttgatcaagagctcgaaaatttagggaagctctaggaatatttgaactcaaccattggaagtagacttgcctgtttgttattaggctgctttggaaatgaaacttgatttggttgtttgaaatattag

upper sequence: GRMZM2G177654_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT1G49400.1 (Arabidopsis thaliana), 5'ss of exon 1
GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgt-----ctgtaattcttgctccttcgattcgtctccaccccttccccgttctgattttgtaa----ggctgtggaaattagcgatgctaact---tctgtaagactggtgt-------------------------
 ||  | ||||||||||||||  | ||||| ||||||||||| || || ||||| |||||||| ||||||||  | ||| |||||||||| ||||| || ||     || |     || || ||||  ||   ||| |           ||| |  |||  ||     ||      ||||||   |  | | |    || | || ||                              
CGATAGACTCTTCCACAACAAAATCTACAATCGCTACGTCAAACGAACTTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAgtaaattctctcgcatttccttcttccctttcactctaatttcgtttgattccgtcttttaaatctgagccacttgaattaggctttgtgattgaacctctgaggctaagaaatttgaaaatctggttgatgtgtag

upper sequence: GRMZM2G177654_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv09s0070g00100.t01 (Vitis vinifera), 5'ss of exon 2
GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaattcttgctccttcgattcgtctccaccccttccccgttctgattttgtaaggctgtggaaattagcgatgcta-acttctgtaagactggtgt
|||||||||||||||||||||| | | ||||||||| ||||| || |||  |||||||||||| || |||||  || ||  |||||||||||| ||||| ||| ||      || |    | ||  ||  |  ||  |  ||  ||| | ||||  |     |   |||| |    ||  | |   |||| |  |  |   
GGACCGTCTCTTCCACAACAAGCTCTTCAACCGCTATGTCAAACGAACCAGCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagt------tgttaaagcaatgggttccttcctttctccacttccgttttttcataatggataaaataacttgtgaaacaacactgtcattccag---

upper sequence: GRMZM2G177654_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv09s0070g00270.t01 (Vitis vinifera), 5'ss of exon 1
GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaattcttgctccttcgattcgtctccaccccttccccgttctgattttgtaaggctgtggaaattagcgatgctaacttctgtaagactggtgt
|||||||||||||||||||||| | | ||||||||| ||||| || |||  |||||||||||| || |||||  || ||  |||||||||||| ||||| ||| ||  ||   ||       | |||  |||  || ||| ||  |     ||| | |   ||   ||| || |      |||  |  ||  | |   | 
GGACCGTCTCTTCCACAACAAGCTCTTCAACCGCTATGTCAAACGAACCAGCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgttaaagc-------aatcggttccttcctttctccacttctgctttttcataatggataaaataacttgtgaaacaacattatcattccag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211517346|gb|FL229649.1|FL229649
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACACCCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211517336|gb|FL229639.1|FL229639
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|33097238|gb|CF057198.1|CF057198
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|16926077|gb|BM079145.1|BM079145
EST:     AAGTTCATGGCACACGACGATGACAACTCGTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: AAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514984|gb|FL229632.1|FL229632
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211517345|gb|FL229648.1|FL229648
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|15590265|gb|BI674881.1|BI674881
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32864992|gb|CF004674.1|CF004674
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|31664172|gb|CD572897.1|CD572897
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|31358467|gb|CD442824.1|CD442824
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514981|gb|FL229629.1|FL229629
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211512631|gb|FL229620.1|FL229620
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211114154|gb|FL229680.1|FL229680
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCACACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113349|gb|FL229654.1|FL229654
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514977|gb|FL229625.1|FL229625
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211517343|gb|FL229646.1|FL229646
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113355|gb|FL229660.1|FL229660
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211114152|gb|FL229678.1|FL229678
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|29945271|gb|CB815556.1|CB815556
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32859454|gb|CD999135.1|CD999135
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514983|gb|FL229631.1|FL229631
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211114144|gb|FL229670.1|FL229670
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|67030599|gb|CO459348.1|CO459348
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|31406168|gb|CD484900.1|CD484900
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|37401165|gb|CF637946.1|CF637946
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|193503400|gb|AM939086.1|AM939086
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|78116823|gb|DV535210.1|DV535210
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGG                         GTTAGGCTGGATCCTTTTAGGCCCTTGAGCAGACACAAGCACTGGGTTGT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACC-GGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGT
EST: gi|211114148|gb|FL229674.1|FL229674
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113354|gb|FL229659.1|FL229659
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32936278|gb|CF041090.1|CF041090
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGTCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|24766150|gb|CA401305.1|CA401305
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|24774101|gb|CA409355.1|CA409355
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACATAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113356|gb|FL229661.1|FL229661
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514988|gb|FL229636.1|FL229636
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|15590266|gb|BI674882.1|BI674882
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|33096672|gb|CF056666.1|CF056666
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|37389659|gb|CF632050.1|CF632050
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211114153|gb|FL229679.1|FL229679
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514986|gb|FL229634.1|FL229634
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211517348|gb|FL229651.1|FL229651
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32858141|gb|CD997822.1|CD997822
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211517339|gb|FL229642.1|FL229642
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211114141|gb|FL229667.1|FL229667
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|15499539|gb|BI596052.1|BI596052
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113353|gb|FL229658.1|FL229658
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211517342|gb|FL229645.1|FL229645
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514976|gb|FL229624.1|FL229624
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514987|gb|FL229635.1|FL229635
EST:     CCAAGTTCATGGCACACGATGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|91055280|gb|EB165698.1|EB165698
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|60341458|gb|DN208431.1|DN208431
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514982|gb|FL229630.1|FL229630
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211114145|gb|FL229671.1|FL229671
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113361|gb|FL229666.1|FL229666
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514978|gb|FL229626.1|FL229626
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113357|gb|FL229662.1|FL229662
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211190707|gb|FL441294.1|FL441294
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113351|gb|FL229656.1|FL229656
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113350|gb|FL229655.1|FL229655
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211517335|gb|FL229638.1|FL229638
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|31440964|gb|CD510395.1|CD510395
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32908507|gb|CF013320.1|CF013320
EST:     GTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: GTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|24961557|gb|CA483564.1|CA483564
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACATAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211038073|gb|FL437945.1|FL437945
EST:     CCTGCAACATTGGCGACCCGG                         GTTAGGCTGGATCCTTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTG
genomic: CCTGCAACATTGGCGA-CCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCC-TTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTG
EST: gi|211113359|gb|FL229664.1|FL229664
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32936083|gb|CF040895.1|CF040895
EST:     ACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: ACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32864450|gb|CF004132.1|CF004132
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|60349478|gb|DN216451.1|DN216451
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113348|gb|FL229653.1|FL229653
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113360|gb|FL229665.1|FL229665
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|84976848|gb|DW475270.1|DW475270
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|78116824|gb|DV535211.1|DV535211
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|24961596|gb|CA483599.1|CA483599
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACATAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|31558521|gb|CD527733.1|CD527733
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGTACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|84980994|gb|DW531343.1|DW531343
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|93014384|gb|EB639904.1|EB639904
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211114149|gb|FL229675.1|FL229675
EST:     CCAAGTTCATGGCACACGACGATKACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211113352|gb|FL229657.1|FL229657
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32914550|gb|CF019362.1|CF019362
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|37381961|gb|CF627889.1|CF627889
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|14883630|gb|BI273457.1|BI273457
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211514985|gb|FL229633.1|FL229633
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|28982812|gb|BQ539540.2|BQ539540
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|32908741|gb|CF013554.1|CF013554
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|29945269|gb|CB815555.1|CB815555
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|44901263|gb|CK827808.1|CK827808
EST:     CCAAGTTCATGGCACACGACGATGACAACACCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
EST: gi|211114143|gb|FL229669.1|FL229669
EST:     CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGG                         GTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT
genomic: CCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 582

GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTTGCTGAAATTCTCCGCAGAGCTAAGGTGTACGTTCCACCAGCTGCAACAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 425

GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTTGCTGAAATTCTCCGCAGAGCTAAGGTGTACGTTCCACCAGCTGCAACAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 417

GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTTGCTGAAATTCTCCGCAGAGCTAAGGTGTACGTTCCACCAGCTGCAACAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 421

GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaatt ... gttctttcagGTTAGGCTGGATCCTTCTAGGCCCTTGAGCAGACACAAGCACTGGGTTGTTGCTGAAATTCTCCGCAGAGCTAAGGTGTACGTTCCACCAGCTGCAACAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaattcttgctccttcgattcgtctccaccccttccccgttctgattttgtaaggctgtggaaattagcgatgctaacttctgtaagactggtgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccgttc