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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACTGTCTTGCTTCACAGGGCGCATGTCTGAACCTGCTCGGTGTCAGGGAGAAGGTGGCTTTGGTCGTGTGTATAAAGGACATATGGAAAATGGGCAGgtttgctaacatttgctgattgtgttgtaatttctgtacactgcaaatttggatatagagtctcattaagaagaaaaagggagaagtcccctgagtgttctaattggttgattgcctgacaccttcgtttttcatcttctatcttgcatag

Basic information

species Zea mays
transcript GRMZM2G177061_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G177061_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g47270.1 (Oryza sativa), 5'ss of exon 2
---CTCACTGTCTTGCTTCACAGGGCGCATGTCTGAACCTGCTCGGTGTCAGGGAGAAGGTGGCTTTGGTCGTGTGTATAAAGGACATATGGAAAATGGGCAGgtttgctaacatttgctgattgtgttgtaatttctgtacactgcaaatttggatatagagtctcattaagaagaaaaagggagaagtcccctgagtgttctaattggttgattgcctgacaccttcgttttt-catcttctatcttgcatag
      | || ||     |||   |   || || |||    ||   ||   ||| |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||    || || |   ||       | ||||   ||      |||   ||    |   ||| |||  |                 ||| | ||||        || || | ||||||||   |||| ||| |   |||| |||   
CCGAGAATTGGCTGTTGCCACCAAGA--ATTTCAGAAAAGACTGCCTGCT-GGGTGAAGGTGGCTTTGGTCGTGTCTATAAAGGACAGATGGAGAATGGACAGgtttgcta----ttcctaacattg-----gctgctgtgtgct-----cttgttcattagctgcaatttagagca-----------------tgatttttct--------gagtgtccgacaccttttcttttgcatatatcatctagcag--