1 5' 3' | 2 5' 3' | 3 5' 3' |
ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctcgcctcctccccgcgcgctcccttcttgcttgactgctcgaggtccgagtcgccgggacggcccggtgacccccgcggaggttcagtacct...
species | Zea mays |
transcript | GRMZM2G175676_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCEST: gi|211439602|gb|FL298833.1|FL298833
genomic: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCEST: gi|32790458|gb|CD942694.1|CD942694
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCEST: gi|33104379|gb|CF064339.1|CF064339
genomic: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCEST: gi|211439601|gb|FL298832.1|FL298832
genomic: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAWATTCTTATTCEST: gi|32799252|gb|CD951488.1|CD951488
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: GGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCEST: gi|32797760|gb|CD949996.1|CD949996
genomic: GGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCEST: gi|211439598|gb|FL298829.1|FL298829
genomic: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCEST: gi|211439607|gb|FL298838.1|FL298838
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGEST: gi|211009131|gb|FL298877.1|FL298877
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGG
EST: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctcgcctcctccccgcgcgctcccttcttgcttgactgctcgaggtccgagtcgccgggacggcccggtgacccccgcggaggttcagtacct
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