Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctcgcctcctccccgcgcgctcccttcttgcttgactgctcgaggtccgagtcgccgggacggcccggtgacccccgcggaggttcagtacct...

Basic information

species Zea mays
transcript GRMZM2G175676_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G175676_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g35274.2 (Oryza sativa), 5'ss of exon 2
ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCG-GCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctcgcctcctccccgcgcgctcccttcttgcttgactgctcgaggtccgagtcgccgggacggcccggtgacccccgcggaggttcagtacct-
                             | ||||| ||  | ||| |  ||||||||||| | |||||| | ||||| |||||||||||||||||||||||||||||     |||| |  | |   |  ||| |  |    |   ||||  |    |  ||  |      |||    |  ||| |  |   || ||  || 
---------------------------CACGCGCGG-CTGGCTGCC-CGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGgtgagatgagatctccccttcccttcccgcctacgggtcctagctctcgctggttcatccggggctttccccccccaattccccca-attctctgtggctg

upper sequence: GRMZM2G175676_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g35274.5 (Oryza sativa), 5'ss of exon 1
ATTCGCCGCTGCGTCAACGTGTCTTCCTTCC-CGCGGTCTCTCCGCCGCCT--CCCAGATCCGGCG-GCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctcgcctcctccccgcgcgctcccttcttgcttgactgctcgaggtccgagtcgccgggacggcccggtgacccccgcggaggttcagtacct-
      |   || ||  |  | | |||| |  | ||  |     || |||   ||||||||||| | |||||| | ||||| |||||||||||||||||||||||||||||     |||| |  | |   |  ||| |  |    |   ||||  |    |  ||  |      |||    |  ||| |  |   || ||  || 
----AACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGgtgagatgagatctccccttcccttcccgcctacgggtcctagctctcgctggttcatccggggctttccccccccaattccccca-attctctgtggctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211003576|gb|FL298853.1|FL298853
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006356|gb|FL298862.1|FL298862
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|32796494|gb|CD948730.1|CD948730
EST:     GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006350|gb|FL298856.1|FL298856
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003563|gb|FL298840.1|FL298840
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|32790458|gb|CD942694.1|CD942694
EST:     GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003570|gb|FL298847.1|FL298847
EST:     CCCAGATCCGGCGGCCATGGCAAGGAAACCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003572|gb|FL298849.1|FL298849
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211009132|gb|FL298878.1|FL298878
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006351|gb|FL298857.1|FL298857
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211009127|gb|FL298873.1|FL298873
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439604|gb|FL298835.1|FL298835
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439597|gb|FL298828.1|FL298828
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006353|gb|FL298859.1|FL298859
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCTTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|33104379|gb|CF064339.1|CF064339
EST:     GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003565|gb|FL298842.1|FL298842
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211009125|gb|FL298871.1|FL298871
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211009126|gb|FL298872.1|FL298872
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003569|gb|FL298846.1|FL298846
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|26558237|gb|CA830472.1|CA830472
EST:     CCCAGATCCGG-GG-CATGGCAAGGAACCC-GGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439601|gb|FL298832.1|FL298832
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAWATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003568|gb|FL298845.1|FL298845
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439605|gb|FL298836.1|FL298836
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211009130|gb|FL298876.1|FL298876
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|32799252|gb|CD951488.1|CD951488
EST:     GGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: GGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|32797760|gb|CD949996.1|CD949996
EST:     GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: GATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211009124|gb|FL298870.1|FL298870
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006349|gb|FL298855.1|FL298855
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|37424110|gb|CF649785.1|CF649785
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006357|gb|FL298863.1|FL298863
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439603|gb|FL298834.1|FL298834
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006361|gb|FL298867.1|FL298867
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003575|gb|FL298852.1|FL298852
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTTCTGTATGAAATTCTTATT
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGG-TTCTGTATGAAATTCTTATT
EST: gi|211437012|gb|FL298824.1|FL298824
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211437011|gb|FL298823.1|FL298823
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211009128|gb|FL298874.1|FL298874
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|21987840|gb|BQ779368.1|BQ779368
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006360|gb|FL298866.1|FL298866
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439606|gb|FL298837.1|FL298837
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|32854471|gb|CD994152.1|CD994152
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439598|gb|FL298829.1|FL298829
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006358|gb|FL298864.1|FL298864
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439607|gb|FL298838.1|FL298838
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGG
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGG
EST: gi|211006352|gb|FL298858.1|FL298858
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|37426455|gb|CF650981.1|CF650981
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439595|gb|FL298826.1|FL298826
EST:     CCCAGATCCGGCGGCCATGGCAWGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211009131|gb|FL298877.1|FL298877
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211006363|gb|FL298869.1|FL298869
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003564|gb|FL298841.1|FL298841
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|76933582|gb|DV173511.1|DV173511
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211003571|gb|FL298848.1|FL298848
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439602|gb|FL298833.1|FL298833
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|148958452|gb|EC904687.2|EC904687
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
EST: gi|211439599|gb|FL298830.1|FL298830
EST:     CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAG                         GTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC
genomic: CCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 68

ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCTCGTGACAAGGAAACTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 130

ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCTCGTGACAAGGAAACTAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 191

ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCTCGTGACAAGGAAACTAG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 58

ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctc ... tcttaaatagGTAACTTGGATGACAAGGTTCCTGAGAGGGTTCTGTATGAAATTCTTATTCAGGTAGGTCGTGTTGTAGACCTACACATACCTCGTGACAAGGAAACTAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCGCCGCTGCGTCAACGTGTCTTCCTTCCCGCGGTCTCTCCGCCGCCTCCCAGATCCGGCGGCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctcgcctcctccccgcgcgctcccttcttgcttgactgctcgaggtccgagtcgccgggacggcccggtgacccccgcggaggttcagtacct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccgc