1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCCTTCTCTCCTCTCCGCTCCCAATCTTATCGTCGCCTCCCTCGAAGTCGCCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcccatatccggccccctctggggtgcgcgccgtcattttatcgccggtgaaccgccgcccgtaccagtcgtgacaccctcgccggcattccc...
species | Zea mays |
transcript | GRMZM2G175510_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCEST: gi|211175329|gb|FL101110.1|FL101110
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCTCGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCTAACATCCEST: gi|211175332|gb|FL101113.1|FL101113
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCEST: gi|211175327|gb|FL101108.1|FL101108
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCTCGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCTAACATCTEST: gi|71332448|gb|DR803183.1|DR803183
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCEST: gi|31354620|gb|CD438977.1|CD438977
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCTCGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCTAACATCCEST: gi|32798447|gb|CD950683.1|CD950683
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCTCGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCTAACATCCEST: gi|211175325|gb|FL101106.1|FL101106
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCTCGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCTAACATCCEST: gi|211175333|gb|FL101114.1|FL101114
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCEST: gi|71428865|gb|DR809915.1|DR809915
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCEST: gi|94478012|gb|EB706970.1|EB706970
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCEST: gi|71448421|gb|DR829471.1|DR829471
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCEST: gi|211175328|gb|FL101109.1|FL101109
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCCEST: gi|30306946|gb|CD001619.1|CD001619
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: CGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGGCCAAGGGGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCEST: gi|74244741|gb|DT652655.1|DT652655
genomic: CGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCC-ACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATC
EST: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGA AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcc ... gtctgagcagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTTCTCTCCTCTCCGCTCCCAATCTTATCGTCGCCTCCCTCGAAGTCGCCGCTGCCTTCATTCCACCATGGCGCTTCACGCCCCGGTCCACGTGATGAgtaagcggcccatatccggccccctctggggtgcgcgccgtcattttatcgccggtgaaccgccgcccgtaccagtcgtgacaccctcgccggcattccc
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