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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCCCCACGCCCACCCATTGAAAAGCAGAGCGGCTGCCGCTCTCCTCCTCCTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagatagaaccccacggaacccccctcccgagctgtttcctcccctgtgttttcatgagttttatgcaacaactttattcgaaatttcgaatacagttaaaagtttcttcttttggtgcacggttcatcaatcacagtgcttttctcccaaatggctggttgcag

Basic information

species Zea mays
transcript GRMZM2G174990_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101402477|gb|EB822801.1|EB822801
EST:     TCCTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: TCCTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|211480226|gb|FK977831.1|FK977831
EST:     CTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: CTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|60338296|gb|DN205269.1|DN205269
EST:     AGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: AGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|1590775|gb|AA072437.1|AA072437
EST:     TCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGAC-GATTCCTGTGCC
genomic: TCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|149084713|gb|EE174205.2|EE174205
EST:     CCTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: CCTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|211483108|gb|FK977835.1|FK977835
EST:     TCCTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: TCCTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|71426247|gb|DR807297.1|DR807297
EST:     AATCATCAGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: AATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|211480223|gb|FK977828.1|FK977828
EST:     AAAATCATCAGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: AAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|211483115|gb|FK977842.1|FK977842
EST:     CTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: CTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|101386148|gb|EB815117.1|EB815117
EST:     AGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: AGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|31611997|gb|CD568619.1|CD568619
EST:     ATCATCAGCT-CCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: ATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
EST: gi|101402741|gb|EB822898.1|EB822898
EST:     CAAAATCATCAGCTCCCGAAATCCAAATTGAAACAG                         TTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC
genomic: CAAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagataga ... ctggttgcagTTGCAGGCGATTCTGAGCTCGGGTTTTGTTCCGGGGACGGATTCCTGTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCCCCCACGCCCACCCATTGAAAAGCAGAGCGGCTGCCGCTCTCCTCCTCCTCCTTCCTGGACAAAATCATCAGCTCCCGAAATCCAAATTGAAACAGgtaagatagaaccccacggaacccccctcccgagctgtttcctcccctgtgttttcatgagttttatgcaacaactttattcgaaatttcgaatacagttaaaagtttcttcttttggtgcacggttcatcaatcacagtgcttttctcccaaatggctggttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC