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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCTGGCAAGAAGAGCCGGCGCGGGCCGCGGTCGCGCAGCTCGCAGTACCGCGGCGTCACGTTCTACCGCCGGACGGGGCGGTGGGAGTCGCACATATGgtaagttccgttgccgcccgccgccctttcctttctcgaggagctcgaggagagagacggagcaggtagcagcagctcagctcgcgaggggaggccggga...

Basic information

species Zea mays
transcript GRMZM2G174784_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174784_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g55560.2 (Oryza sativa), 5'ss of exon 1
CGGCTGGCAAGAAGAGCCGGCGCGGGCCGCGGTCGCGCAGCTCGCAGTACCGCGGCGTCACGTTCTACCGCCGGACGGGGCGGTGGGAGTCGCACATATGgtaagt---tccgttgccgcccgc-cgccctttcctttctcgaggagctcga-ggagagagacggagc-aggtagcagcagctcagctcgcgaggggaggccggga
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||| ||| || || || || |||||| || ||||| ||||| | |||| ||| |||| || || ||| | | || |||
CGGTGTCCAAGAAGAGCCGGCGCGGGCCGCGGTCGCGCAGCTCGCAGTACCGCGGCGTCACGTTCTACCGCCGCACCGGGCGATGGGAATCGCACATATGgtaagcatcctcgtctcctcctgctcgttctttccattttcgag-agctcaacggaggaagaaggagagagagagaggcaaaggggagcaaaagaagagca-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110933863|gb|EE154089.1|EE154089
EST:     CGCGGCGTCACGTTCTACCGCCGGACGGGGCGGTGGGAGTCGCACATATG                         GGATTGCGGCAAGCAGGTCTATTTGGGTAAGTTTCGTTCATGTCCATGCAT
genomic: CGCGGCGTCACGTTCTACCGCCGGACGGGGCGGTGGGAGTCGCACATATGgtaagttccg ... tgcaatgcagGGATTGCGGCAAGCAGGTCTATTTGGGTAAGTTTCGTTCATGTCCATGCAT