1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGGGCATCGAGGCGCGGGCGCGGGATCTCGGGGTGGACCTCTCCGCTGTCGATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcacgcgccgcctcacgtcaggtcccaatcagtgacaggcgccagcttagcgcgcttaatatgtggtggccttggttgccctaattctgctttt...
species | Zea mays |
transcript | GRMZM2G174757_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211181446|gb|FL114903.1|FL114903
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACRAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211181447|gb|FL114904.1|FL114904
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211183853|gb|FL114921.1|FL114921
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GAWCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211183855|gb|FL114923.1|FL114923
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211183848|gb|FL114916.1|FL114916
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|89759553|gb|DY688345.1|DY688345
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGAATCGTCAG TGATGACCAGGAGGTACTTCGTGGTGAGGATCTTCCCGAACTTEST: gi|211181449|gb|FL114906.1|FL114906
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTT
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211181452|gb|FL114909.1|FL114909
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211183845|gb|FL114913.1|FL114913
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211181455|gb|FL114912.1|FL114912
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|78085595|gb|DV513988.1|DV513988
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211183849|gb|FL114917.1|FL114917
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|149098249|gb|EE184215.2|EE184215
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|9952026|gb|BE638609.1|BE638609
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211020785|gb|FL433473.1|FL433473
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211181453|gb|FL114910.1|FL114910
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGAGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211183850|gb|FL114918.1|FL114918
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: ATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCNRG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGEST: gi|211181448|gb|FL114905.1|FL114905
genomic: ATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCA-Ggtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGNCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211183852|gb|FL114920.1|FL114920
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|149079566|gb|EE168554.2|EE168554
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|31441047|gb|CD510478.1|CD510478
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|148971737|gb|EE022470.2|EE022470
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGGEST: gi|211181443|gb|FL114900.1|FL114900
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
EST: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAG TGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
genomic: GATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcac ... caatttgcagTGATGACGAGGAGGTACTTCGTGGTGAGGATCTTCCAGAACTTGAAATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCATCGAGGCGCGGGCGCGGGATCTCGGGGTGGACCTCTCCGCTGTCGATCTGGACTCCATCACCCTCCCGGCCGGCGAGGACTTCGGCATCGTCAGgtagacgcacgcgccgcctcacgtcaggtcccaatcagtgacaggcgccagcttagcgcgcttaatatgtggtggccttggttgccctaattctgctttt
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