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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCAACAGCACGAGGTGGAGTACGACACGGAGCACGGCCTCGACGTCCTCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAGgtccgcagcaccccttccctagtcccgatcccatagtttcggcgcgatccggacgccactgacgcctgcactgcttcccacttcccggtcgtgcttgcag

Basic information

species Zea mays
transcript GRMZM2G173416_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173416_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g31460.1 (Oryza sativa), 5'ss of exon 1
GGAGCAACAGCACGAGGTGGAGTACGACACGGAGCACGGCCTCGACGTCCTCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAGgtccgcagcaccccttccctagtcccgatcccatagtttcg------gcgcgatccggacgccactgacgcctgcactgcttcccacttcccggtcgtgcttgcag----------------------------------------------------------
|| | |  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||  |    ||  | ||||  |   |||   |   ||      || ||   | | | |||| |||  | |  |  |  |     | ||||| | | | || |                                                          
GGCGGAGGAGCACGAGGTGGAGTACGACACGGAGCACGGCCTCGACATCCTCCGCCTCCAGATCTTCTCCCTCACCTCCGTCCCGCCCGAGCTCCAGAAGgttcgcgac-tgactgacttagtttcccccccgccgcgccgcgccctgcacgggacagcctccaccgaccaccgtcc--ccgcgggtgttccggttg-gttggctggcctctgctctgatcgatttcggcgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211072100|gb|FK968189.1|FK968189
EST:     TCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAG                         ATCGTGGTGGAGGCGGATGGGTCNGGTGGTGGACGACGGCACCGACCTGGA
genomic: TCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAGgtccgcagca ... gtgcttgcagATCGTGGTGGAGGCGGATGGGTC-GGTGGTGGACGACGGCACCGACCTGGA
EST: gi|101393672|gb|EB818768.1|EB818768
EST:     TCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAG                         ATCGTGGTGGAGGCGGATGGGTCGGTGGTGGACGACGGCACCGACCTGGAA
genomic: TCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAGgtccgcagca ... gtgcttgcagATCGTGGTGGAGGCGGATGGGTCGGTGGTGGACGACGGCACCGACCTGGAA
EST: gi|76919533|gb|DV167765.1|DV167765
EST:     TCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAG                         ATCGTGGTGGAGGCGGATGGGTCGGTGGTGGACGACGGCACCGACCTGGAA
genomic: TCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAGgtccgcagca ... gtgcttgcagATCGTGGTGGAGGCGGATGGGTCGGTGGTGGACGACGGCACCGACCTGGAA
EST: gi|211122216|gb|FL355461.1|FL355461
EST:     TCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAG                         ATCGTGGTGGAAGCGGATGGGTCGGTGGTGGACGACGGCACCGACCT
genomic: TCCGCCTCCAGATCTTTTCCCTCACCGCCGTCCCGCCCGACCTCCAGAAGgtccgcagca ... gtgcttgcagATCGTGGTGGAGGCGGATGGGTCGGTGGTGGACGACGGCACCGACCT