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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGGCGTCCTCAAGCACCGCTATGCCGACTTCATCGTCCATGAGGTTGCCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtcctctgtgaaagttttagtccatagctgcgcttctccgattccaatcttcctgccaaatgcgaattgcag

Basic information

species Zea mays
transcript GRMZM2G173137_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211270947|gb|FL142981.1|FL142981
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGCGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|211270946|gb|FL142980.1|FL142980
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|211270950|gb|FL142984.1|FL142984
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|211270945|gb|FL142979.1|FL142979
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|211270948|gb|FL142982.1|FL142982
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|101396092|gb|EB819973.1|EB819973
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|211270949|gb|FL142983.1|FL142983
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCGCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|93283509|gb|EB675773.1|EB675773
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|211270951|gb|FL142985.1|FL142985
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTTTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|19057910|gb|BM736577.1|BM736577
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: gi|211270952|gb|FL142986.1|FL142986
EST:     CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG                         AGCGTTGGCGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCGGCGTCCTCAAGCACCGCTATGCCGACTTCATCGTCCATGAGGTTGCCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtcctctgtgaaagttttagtccatagctgcgcttctccgattccaatcttcctgccaaatgcgaattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA