1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
CCGCGGCGTCCTCAAGCACCGCTATGCCGACTTCATCGTCCATGAGGTTGCCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtcctctgtgaaagttttagtccatagctgcgcttctccgattccaatcttcctgccaaatgcgaattgcag
species | Zea mays |
transcript | GRMZM2G173137_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGCGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|211270946|gb|FL142980.1|FL142980
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|211270950|gb|FL142984.1|FL142984
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|211270945|gb|FL142979.1|FL142979
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|211270948|gb|FL142982.1|FL142982
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|101396092|gb|EB819973.1|EB819973
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|211270949|gb|FL142983.1|FL142983
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCGCCGTCGGCTGAAGCGGATEST: gi|93283509|gb|EB675773.1|EB675773
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|211270951|gb|FL142985.1|FL142985
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTTTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|19057910|gb|BM736577.1|BM736577
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGATEST: gi|211270952|gb|FL142986.1|FL142986
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
EST: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAG AGCGTTGGCGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
genomic: CCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtc ... cgaattgcagAGCGTTGGTGTGAACGAAGAGGACAAGGCGGCCCCGTCGGCTGAAGCGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCGGCGTCCTCAAGCACCGCTATGCCGACTTCATCGTCCATGAGGTTGCCCGCGATGGCGCTCTCGTCCAGCTCACCTCGTTCGACCTCCCCACCGAGgtatcaggtcctctgtgaaagttttagtccatagctgcgcttctccgattccaatcttcctgccaaatgcgaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA