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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGCAACCCGGAGCTTATTCGTGAGTCCCAGCGCAGCCGGTTCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtccactcccctcattaccctggcccccgcccccctccctcaaacgtcttccagatcccggtcggtctctgactctcagtggttcgcgtcgctgctgcag

Basic information

species Zea mays
transcript GRMZM2G172101_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G172101_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g10190.1 (Oryza sativa), 5'ss of exon 1
GGCGGCAACCCGGAGCTTATTCGTGAGTCCCAGCGCAGCCGGTTCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtccactcccctcattaccctggcccccgcccccctccctcaaacgtcttccagatcccggtcggtctctgactctcagtggttcgcgtcgctgctgcag
|||||| |||||||||| || ||  |||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |    |||||| | |||||| |      |  ||| | |||| |             |   || |||  ||| |||||||    ||||| ||||  |  ||   |   | ||   || ||||
GGCGGCGACCCGGAGCTGATCCGCAAGTCGCAGCGCAACCGCTCCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACGACCAGTGGCGCCAGAgtaagagagggg-cttctcctcacccgga------------ttgatcgaac-ccttgcagatccg---cggtccctgatccctagctat--acttcttcgccgcag

upper sequence: GRMZM2G172101_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g37837.2 (Oryza sativa), 5'ss of exon 1
GGCGGCAACCCGGAGCTTATTCGTGAGTCCCAGCGCAGCCGGTTCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtccactcccctcattaccctggcccccgcccccctccctcaaacgtcttccagatc--ccggtcggtctctgactctcagtggttcgcgtcgctgctgcag
|||||| |||||||||| || ||   ||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |    |||||| | |||||| |        | || | || |   |||  ||         || |||  ||| |  |||  |||  |  || |||||    |||  | |  ||    || ||||
GGCGGCGACCCGGAGCTGATCCGCAGGTCGCAGCGCAACCGCTCCGCCTCCGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACGACCAGTGGCGCCAGAgtaagagagagggggcttc-tcactc--acccgggcggga-----tcgaaccccttgcgaatccgccgtcccttccctgaccactagttatgcttgtt--cgccgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211021857|gb|FL368551.1|FL368551
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
EST: gi|211054847|gb|FL421737.1|FL421737
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
EST: gi|18171951|gb|BM347339.1|BM347339
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
EST: gi|148937654|gb|EC881846.2|EC881846
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
EST: gi|37421408|gb|CF648402.1|CF648402
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
EST: gi|18174283|gb|BM349671.1|BM349671
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
EST: gi|148931370|gb|EC874280.2|EC874280
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
EST: gi|28985482|gb|CB350662.1|CB350662
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
EST: gi|18164364|gb|BM334203.1|BM334203
EST:     CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAA                         GGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA
genomic: CGTCGAGCTCGTCGACGAGGTCATCGCCCTCGACAAGGCATGGCGCGAAAgtaagtgtcc ... gctgctgcagGGCAGTTCGAGCTGGACAAGATCCGGCAGGAGCTCAACGCTACCAGCAAGA