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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTGTTTGTTTATCGGCGCAGCTCACTGGCACGCAGTACGCGTCGTCACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGAgtaagattgtggcctgcgcctttgcaattgttacattgtttagacctttgcgggctcgcggctttgcattcgttgccgtgcgtctcggtgtgtgcccgtt...

Basic information

species Zea mays
transcript GRMZM2G171745_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171745_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g30840.4 (Oryza sativa), 5'ss of exon 2
GGGTTTGTTTGTTTATCGGCGCAGCTCACTGGCACGCAGTACGCGTCGTCACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGAgtaagattgtggcctgcgcctttgcaattgttacattgtttagacctttgcgggctcgcggctttgcattcgttgc-cgtgcgt-ctcggtgtgtgcccgtt-
                        |||||||| |||||||| |||||||| |||||| ||||||| ||||||||||| || ||  |||| |||||||||||||||||     ||| |  | |||| |||  ||||||   | | || ||  |     |  |   ||| |    ||    ||| |  | |||| |||    |  
------------------------CTCACTGGAACGCAGTATGCGTCGTCTCTGGACGTGCTCCGCCTCTTCGCCTATGGGACATTGAAGGACTACAAGAgtaagatcaccccctcc--cgttgcgattcgtacattacattg-cccttatgtatgtgttgtcatgcgtcatatgtgtatgcttatttggtgcgtgagtctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76012366|gb|DT939536.1|DT939536
EST:     ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGA                         GTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAA
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGAgtaagattgt ... gcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAA