Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCGGAGGACGCCGCCGCCGCGCGCCGACGGGCCGCCATAACCGACTACCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtcccgctcccctccccctcctgccctcacctaccttgctcagctccagtctccctagggttcggggtggccgattcccgtgtctcattagtt...

Basic information

species Zea mays
transcript GRMZM2G171604_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171604_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g10640.1 (Oryza sativa), 5'ss of exon 1
GATGCGGAGGACGCCGCCGCCGCGCGCCGACGGGCCGCCATAACCGACTACCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtcccgctcccctccccctcctgccctcacctaccttgctcagctccagtctccctagggttcgg-ggtggccgattcccgtgtctcattagtt-----
|| | |||||||||||||||||| ||||| || ||| || | || || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||       || | ||| | |  ||    |||  |||||||||||||||| || |   | || |  |||  |  |||       
GACGGGGAGGACGCCGCCGCCGCCCGCCGCCGCGCCTCCGTGACGGAGTACCGGAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCAGCACCGgtgagccg-cccgctccccacccctctacttcccc-cctgcttgact----tccgatctccctagggttcggaggcgatgggttgcgatgttaccctagccgccgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211213805|gb|FL354215.1|FL354215
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|108954122|gb|EC365012.1|EC365012
EST:     CGGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGANAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|485586|gb|T18656.1|T18656
EST:     GTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: GTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|149076338|gb|EE164954.2|EE164954
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211492303|gb|FL342621.1|FL342621
EST:     CCGCAAGAWGCTGCTCAACTGCAGGGAGCTCGAGTNGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|21760157|gb|BQ635698.1|BQ635698
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148999624|gb|EE036609.2|EE036609
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|149111231|gb|EE294729.2|EE294729
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211365432|gb|FL362341.1|FL362341
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211064808|gb|FL351653.1|FL351653
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|87157334|gb|DY402123.1|DY402123
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|28910242|gb|CB331341.1|CB331341
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211472283|gb|FL320091.1|FL320091
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211150843|gb|FL322002.1|FL322002
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCSCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|149081781|gb|EE170935.2|EE170935
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|26559696|gb|CA831931.1|CA831931
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148936301|gb|EC880384.2|EC880384
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211465038|gb|FL331926.1|FL331926
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211439881|gb|FL309181.1|FL309181
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211139132|gb|FL349875.1|FL349875
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTTGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211093327|gb|FL316665.1|FL316665
EST:     CCGCAAGANGCTGCTCAACTGCAGGGAGCTCGARTNGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211337754|gb|FL341964.1|FL341964
EST:     CCGCAAGANGCTGCTCAACTGCAGGGAGCTCGAGTNGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|93284400|gb|EB676664.1|EB676664
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211203006|gb|FL329083.1|FL329083
EST:     CCGCAAGANGCTGCTCAACTGCAGGGAGCTCGAGTNGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211342590|gb|FL343872.1|FL343872
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|149080389|gb|EE169410.2|EE169410
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211409147|gb|FL322194.1|FL322194
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148959843|gb|EE153075.2|EE153075
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148953590|gb|EC898944.2|EC898944
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211500957|gb|FL349225.1|FL349225
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211324258|gb|FL315472.1|FL315472
EST:     CSGCAAGADGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|22935727|gb|BU572002.1|BU572002
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148967099|gb|EE018270.2|EE018270
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211390789|gb|FL311859.1|FL311859
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211325283|gb|FL366955.1|FL366955
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211021609|gb|FL356213.1|FL356213
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211351952|gb|FL331043.1|FL331043
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211090841|gb|FL316182.1|FL316182
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148942358|gb|EC887376.2|EC887376
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211540112|gb|FL312487.1|FL312487
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|20803091|gb|BQ294141.1|BQ294141
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGA-TTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211280124|gb|FL354645.1|FL354645
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211440219|gb|FL323905.1|FL323905
EST:     CCGCAAGANGCTGCTCAACTGCAGGGAGCTCGAGTHGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211419255|gb|FL320485.1|FL320485
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211524951|gb|FL309212.1|FL309212
EST:     CCGCAAGANGCTGCTCAACTGCAGGGAGCTCGARTNGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|31358883|gb|CD443240.1|CD443240
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211369961|gb|FL325625.1|FL325625
EST:     CCGCAAGANGCTGCTCAACTGCAGGGAGCTCGAGTNGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211101807|gb|FL362945.1|FL362945
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148931017|gb|EC873580.2|EC873580
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211528496|gb|FL328398.1|FL328398
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|29543670|gb|CB604050.1|CB604050
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211286547|gb|FL312258.1|FL312258
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|67033051|gb|CO461800.1|CO461800
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148979144|gb|EE026532.2|EE026532
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211112198|gb|FL307984.1|FL307984
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211043933|gb|FL341754.1|FL341754
EST:     CCGCAAGADGCTGCTCAACTGCAGGGAGCTCGAGTNGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211520277|gb|FL356683.1|FL356683
EST:     CCGCAAGADGCTGCTCAACTGCAGGGAGCTCGAGTVGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAMAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|148964792|gb|EC906040.2|EC906040
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211295364|gb|FL325953.1|FL325953
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|26457506|gb|CA829089.1|CA829089
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|149112655|gb|EE191390.2|EE191390
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211100591|gb|FL309393.1|FL309393
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|149100597|gb|EE186683.2|EE186683
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211130576|gb|FL330790.1|FL330790
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211260752|gb|FL356971.1|FL356971
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|211213471|gb|FL339252.1|FL339252
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|149009942|gb|EE041784.2|EE041784
EST:     CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: CCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
EST: gi|511349|gb|T23327.1|T23327
EST:     GTCGCGCGTCGGCACCG                         TGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG
genomic: GTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 619

GATGCGGAGGACGCCGCCGCCGCGCGCCGACGGGCCGCCATAACCGACTACCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACGACTTGAAATCTCTGCAGAGCGTGGGGCAAATAATTGGAGAGGTTCTCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 427

GATGCGGAGGACGCCGCCGCCGCGCGCCGACGGGCCGCCATAACCGACTACCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACGACTTGAAATCTCTGCAGAGCGTGGGGCAAATAATTGGAGAGGTTCTCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 190

GATGCGGAGGACGCCGCCGCCGCGCGCCGACGGGCCGCCATAACCGACTACCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACGACTTGAAATCTCTGCAGAGCGTGGGGCAAATAATTGGAGAGGTTCTCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 503

GATGCGGAGGACGCCGCCGCCGCGCGCCGACGGGCCGCCATAACCGACTACCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtc ... ttgcatgcagTGAGAGAAAGCCTTAAAAATGCAAAGAGGGATTTTACCAAGACTGAAGACGACTTGAAATCTCTGCAGAGCGTGGGGCAAATAATTGGAGAGGTTCTCCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGCGGAGGACGCCGCCGCCGCGCGCCGACGGGCCGCCATAACCGACTACCGCAAGAAGCTGCTCAACTGCAGGGAGCTCGAGTCGCGCGTCGGCACCGgtgagtcgtcccgctcccctccccctcctgccctcacctaccttgctcagctccagtctccctagggttcggggtggccgattcccgtgtctcattagtt

- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctag