1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCATCTTCTGGCTTCTGTTTCTGTTTCTTTGATCAGGTGGGTGCAATGGGAGGTAGCGGAACGCTGATCTCGGTTTACCCCGAGGAGCTCACCTTCTTGTgtaagctgtgtggatttattgatatattcgttcgcattgcgattggttaaatttctcctccgcgttgaattcttgcgcgtag
species | Zea mays |
transcript | GRMZM2G171406_T06 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGTAGCGGAACGCTGATCTCGGTTTACCCCGAGGAGCTCACCTTCTTGT TTGAGCTGGAGAAGCCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGEST: gi|93012917|gb|EB638437.1|EB638437
genomic: AGGTAGCGGAACGCTGATCTCGGTTTACCCCGAGGAGCTCACCTTCTTGTgtaagctgtg ... ttgcgcgtagTTGAGCTGGAGAAGCCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
EST: AGGTAGCGGAACGCTGATCTCGGTTTACCCCGAGGAGCTCACCTTCTTGT TTGAGCTGGAGAAGCCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGEST: gi|89251407|gb|DY623193.1|DY623193
genomic: AGGTAGCGGAACGCTGATCTCGGTTTACCCCGAGGAGCTCACCTTCTTGTgtaagctgtg ... ttgcgcgtagTTGAGCTGGAGAAGCCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
EST: AGGTAGCGGAACGCTGATCTCGGTTTACCCCGAGGAGCTCACCTTCTTGT TTGAGCTGGAGAAGCCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
genomic: AGGTAGCGGAACGCTGATCTCGGTTTACCCCGAGGAGCTCACCTTCTTGTgtaagctgtg ... ttgcgcgtagTTGAGCTGGAGAAGCCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCTTCTGGCTTCTGTTTCTGTTTCTTTGATCAGGTGGGTGCAATGGGAGGTAGCGGAACGCTGATCTCGGTTTACCCCGAGGAGCTCACCTTCTTGTgtaagctgtgtggatttattgatatattcgttcgcattgcgattggttaaatttctcctccgcgttgaattcttgcgcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA