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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAAAGTTTCGGCGGCCTTCTCCATGAACACGGTGGCTTCGCTGCCTTTGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctccctctttgatcgtctatatggatggagtatgtgtgttgtgagttgagattgatcgaagcctgtctctgacgacgccgatgccgatgctcggtcgttgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G171390_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71773513|gb|DR971413.1|DR971413
EST:     TGGCGCCGCGCCTACTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGCCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|76290758|gb|DV030326.1|DV030326
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|91055542|gb|EB165960.1|EB165960
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|148944802|gb|EC889946.2|EC889946
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|71437528|gb|DR818578.1|DR818578
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|211346611|gb|FL190888.1|FL190888
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|76935489|gb|DV174344.1|DV174344
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|101394335|gb|EB819102.1|EB819102
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|78089256|gb|DV517630.1|DV517630
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|71447084|gb|DR828134.1|DR828134
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
EST: gi|78085618|gb|DV514011.1|DV514011
EST:     TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAG                         GACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC
genomic: TGGCGCCGCGCCTGCTCATTAAGCCCTCCCTCGCCTGCTTCTCCAGAAAGgtgggtctcc ... ttgcgtgcagGACGTCGGCCGCTATGGCGGGATCAAGGTGTACGCCGTGCTCAGGGAAGAC