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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCGGCATGGGCGACGACGCCGAGCTCGAGGAGGGGGAGGCCTGCGCCTGCGGGGACGACACCGCCTTCGTCGACCCCGATGTCGCGCTCTCTTACATTgtgagtcgcttatcgccgcgcctcgctcgtcccctcccgcaatgtcgcggctctgcccttgcttccggtccggccaccctctcctggcgtgtcaggaatc...

Basic information

species Zea mays
transcript GRMZM2G171068_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171068_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g47360.1 (Oryza sativa), 5'ss of exon 1
------CCCCGGCATGGGCGACGACGCCGAGCTCGAGGAGGGGGAGGCCTGCGCCTGCGGGGACGACACCGCCTTCGTCGACCCCGATGTCGCGCTCTCTTACATTgtgagtcg----cttatcgccgcgcct-cgctcgtcccctcccgcaatgtcgcggctctgcccttgcttccggtccggccaccctctcctggcgtgtcaggaatc
         ||||||||  |||||||| |||||||||||||||||||||||||      ||||||| || ||||||||||||||||| |||||||||||||||||||||||| |    |  | ||    |||  || |   | |  | |    ||     |    |   |   | |  ||  ||       |   || ||  | |      
CGCAGCGGGCGGCATGGAGGACGACGCGGAGCTCGAGGAGGGGGAGGCCTGCG------GGGACGAGACGGCCTTCGTCGACCCCGACGTCGCGCTCTCTTACATTgtgagtggtggcccgagcgaaatgcccgcggtttcctctgctcctgttgagttcgtcgcggtttctatgcttgtttggtagttgcccgatgacgatttaa-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88756503|gb|DY540644.1|DY540644
EST:     GCGGGGACGCCTCCGCCTTTGTCGACCCAGATGTCGCGCTCTCTTACATC                         GAGGAAAAGCTTCAAGACATACTTGGCCATTTCCAGAAGGACTTCGAAGGA
genomic: GCGGGGACGACACCGCCTTCGTCGACCCCGATGTCGCGCTCTCTTACATTgtgagtcgct ... cttgtttcagGACGAAAAGCTTCAAGACATACTTGGCCATTTCCAGAAGGACTTCGAAGGA
EST: gi|88756502|gb|DY540643.1|DY540643
EST:     GCGGGGACGACACCGCCTTCGTCGACCCCGATGTCGCGCTCTCTTACATT                         GACGAAAAGCTTCAAGACATACTTGGCCATTTCCAGAAGGACTTCGAAGGA
genomic: GCGGGGACGACACCGCCTTCGTCGACCCCGATGTCGCGCTCTCTTACATTgtgagtcgct ... cttgtttcagGACGAAAAGCTTCAAGACATACTTGGCCATTTCCAGAAGGACTTCGAAGGA