1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACGTGGAACGCCAACAGCCTGCTCCTCCGGATGAAGAGCGACTGGCCTGCTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatctggttcctccccgtccccgaccccgatgggttcaatctgcaaggccacacgctcgtctgaaccacctgtaggcgggccggcgaggcccgt...
species | Zea mays |
transcript | GRMZM2G170291_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAG GAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGTEST: gi|211321949|gb|FK966255.1|FK966255
genomic: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatc ... tctttgttagGAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGT
EST: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAG GAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGTEST: gi|211194081|gb|FL030608.1|FL030608
genomic: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatc ... tctttgttagGAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGT
EST: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAG GAAGTGCGGATG-CGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGTEST: gi|211471748|gb|FL295692.1|FL295692
genomic: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatc ... tctttgttagGAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGT
EST: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAG GAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGTEST: gi|211194080|gb|FL030607.1|FL030607
genomic: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatc ... tctttgttagGAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGT
EST: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAG GAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGTEST: gi|91873537|gb|EB403494.1|EB403494
genomic: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatc ... tctttgttagGAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGT
EST: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAG GAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGTEST: gi|211194082|gb|FL030609.1|FL030609
genomic: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatc ... tctttgttagGAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGT
EST: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAG GAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGTEST: gi|89757612|gb|DY687140.1|DY687140
genomic: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatc ... tctttgttagGAAGTGCGGATGCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAGT
EST: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAG GAAGTGCGGATGCCCGGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAG
genomic: CTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatc ... tctttgttagGAAGTGCGGATGCC-GGCAGCTGGTTCCAAAGGGGCACCTAAAAACCCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGTGGAACGCCAACAGCCTGCTCCTCCGGATGAAGAGCGACTGGCCTGCTTTCTCGCAGCTCGTCGCCCGCCTTGACCCCGACGTCATTTGTGTCCAGgtgagcgatctggttcctccccgtccccgaccccgatgggttcaatctgcaaggccacacgctcgtctgaaccacctgtaggcgggccggcgaggcccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC