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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGACAAGACGGTCCACATCATCGACCTCCTCACCGCCGACGGCGTCTCGTACCACAAGACATGCTTCAAGTGCAGCCACTGCAAGGGCGTCCTCTCGgtatgcatgcgtggcctgagctcaactccgcatgcgcattcgccctgcttgcgatgtgtgcggcaatgcgctaatgctcatttgcatcgaaagaaacgaagctttgtttgattcggttcagatcatctcgacagatgaacatgtagaaatacggtctcattttttcatttctgcatgcgtctcctccag

Basic information

species Zea mays
transcript GRMZM2G170034_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G170034_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g42820.1 (Oryza sativa), 5'ss of exon 1
CTGCGACAAGACGGTCCACATCATCGACCTCCTCACCGCCGACGGCGTCTCGTACCACAAGACATGCTTCAAGTGCAGCCACTGCAAGGGCGTCCTCTCGgtatgcatgcgtggcctgagctcaactccgcatgcgcattcgccctgcttgcgatgtgtgcggcaatgcgctaatgctcatttgcatcgaaagaaacgaagctttgtttgattcggttcagatcatctcgacagatgaacatgtagaaatacggtctcattttttcatttctgcatgcgtctcctccag
 ||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||| ||   |||| |    ||  | | |||     |   |  | | ||    |  ||     |||   |||   |   ||| | |  |||  |   | || |     |                                                                               
GTGCGACAAGACCGTCCATTTCATCGACCTCCTCACCGCCGACGGCGTCTCCTACCACAAGACATGCTTCAAGTGCAGCCACTGCAAGGGGACCCTCTCGgtatgtatatatggcatcga-tcggccctgca-----acatgttcagtttttattaggtaattaaatcaactatcacattttt-cgttcaaaacatttacgcatctgcag-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101401202|gb|EB822279.1|EB822279
EST:     CGTACCACAAGACATGCTTCAAGTGCAGCCACTGCAAGGGCGTCCTCTCG                         ATTAGCAGCTACTCTTCCATGGACGGCGTCCTGTACTGCAAGACGCACTTT
genomic: CGTACCACAAGACATGCTTCAAGTGCAGCCACTGCAAGGGCGTCCTCTCGgtatgcatgc ... tctcctccagATTAGCAGCTACTCTTCCATGGACGGCGTCCTGTACTGCAAGACGCACTTT