1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTCGCAAATCCCCGCCACCCCCATTTCCACCGCCAGATTCGGTGCCGTCAGGATCGATTTCTTGTGCATCTTGGAGCATCTACAAGGGgtgggcgactcagcaaaatctgctggcatctcctctcttttcttgcatcgaattttgtaattgccgactgaaccgtgcag
species | Zea mays |
transcript | GRMZM2G169914_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGGTGCCGTCAGGATCGATTTCTTGTGCATCTTGGAGCATCTACAAGGG AGAAGTCTTGACAAGCGCATGGGCGGAGGTGGAAATGGGGAATCGTGCGATEST: gi|211312002|gb|FL324783.1|FL324783
genomic: TCGGTGCCGTCAGGATCGATTTCTTGTGCATCTTGGAGCATCTACAAGGGgtgggcgact ... aaccgtgcagAGAAGTCTTGACAAGCGCATGGGCGGAGGTGGAAATGGGGAATCGTGCGAT
EST: TCGGTGCCGTCA-GATCGATTTCTTGTGCATCTTGGAGCATCTACAAGGG AGAAGTCTTGACAAGCGCATGGGCGGAGGTGGAAATGGGGAATCGTGCGATEST: gi|88752899|gb|DY537040.1|DY537040
genomic: TCGGTGCCGTCAGGATCGATTTCTTGTGCATCTTGGAGCATCTACAAGGGgtgggcgact ... aaccgtgcagAGAAGTCTTGACAAGCGCATGGGCGGAGGTGGAAATGGGGAATCGTGCGAT
EST: TCGGTGCCGTCAGGATCGATTTCTTGTGCATCTTGGAGCATCTACAAGGG AGAAGTCTTGACAAGCGCATGGGCGGAGGTGGAAATGGGGAATCGTGCGAT
genomic: TCGGTGCCGTCAGGATCGATTTCTTGTGCATCTTGGAGCATCTACAAGGGgtgggcgact ... aaccgtgcagAGAAGTCTTGACAAGCGCATGGGCGGAGGTGGAAATGGGGAATCGTGCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCAAATCCCCGCCACCCCCATTTCCACCGCCAGATTCGGTGCCGTCAGGATCGATTTCTTGTGCATCTTGGAGCATCTACAAGGGgtgggcgactcagcaaaatctgctggcatctcctctcttttcttgcatcgaattttgtaattgccgactgaaccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - -CGGTGCCG