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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTGTGATTGATGCTAATACTGAATTGCTTAATGTTGGAAATAGGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgtttggctcttacgaaaggacatctaactgagttggttaggtagtctgaatagcactccttaggtcatgagtttaactctccgtgagaggga...

Basic information

species Zea mays
transcript GRMZM2G169095_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169095_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g33340.1 (Oryza sativa), 5'ss of exon 13
CCGTGTGATTGATGCTAATACTGAATTGCTTAATGTTGGAAATAGGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgtttggctcttacgaaa-ggacatctaactgagttggttaggtagtctga-atagcactccttaggtcatga-gtttaactctccgtgagaggga
                                             || ||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||| | ||   || | |  |     || || |      |    |    ||| ||| || |  |   |     | | | | | || |   |   ||     
---------------------------------------------GTGTTGAAAGGCCACATTGCACTAGACACTGCTGTATTTCCTAATGGAACCACAGgtgagtattttgaactttcataattcatacttccatacatatgaactctagagtttgacattgatcatgtcgtaccctaatgataaaatggtctccaggt---

upper sequence: GRMZM2G169095_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g33330.1 (Oryza sativa), 5'ss of exon 14
CCGTGTGATTGATGCTAATACTGAATTGCTTAATGTTGGAAATAGGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgtttggctcttacgaaaggacatctaactgagttggttaggtagtctgaatagcactccttaggt--catga-gtttaactctccgtgagaggga---
                                             |||||||||||||| ||||||||||||| |||||| ||||| ||||| ||||||||||||| | ||  ||| | |       || |||| ||   |    |  | ||  | ||||    || |  | |  | | | | | || |    |  |||   |   
---------------------------------------------GTTTTGAAAGGCCATATTGCACTAGACAGTGCTGTATTTCCCAATGGAACGACAGgtgagtgttttgagctttcat------acttctatctatatgaactcaggagatttaatattgatcatgtgttaccctaatgataaaatggatgccagatttacca

upper sequence: GRMZM2G169095_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g45360.1 (Oryza sativa), 5'ss of exon 12
CCGTGTGATTGATGCTAATACTGAATTGCTTAATGTTGGAAATAGGTTTTGAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtt--tgtttggctcttacgaaaggacatctaactgagttggttaggtagtctgaatagcactccttaggtcatgagtttaactctccgtgagaggga--
                                             ||||||||||||||||||||||| |||| |||||| ||||| ||||| || ||||||||||   ||||| |  |||    |    ||||||  |||  |    |||   | | || |    || |  |  |    | | || |  | |  ||| | |  
---------------------------------------------GTTTTGAAAGGCCACATTGCACTGGACACTGCTGTATTTCCCAATGGAACCACAGgtgagtgagtgttttgagcttttatacttccatctatatgaact---caggagattt-aacattgatcatgtgtcccaatgataaaatagctgccagatgtacc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211089692|gb|FL030411.1|FL030411
EST:     GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG                         GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: gi|211092150|gb|FL030416.1|FL030416
EST:     GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG                         GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: gi|67010801|gb|CO439550.1|CO439550
EST:     GCTGTGTTTCTCT-ATGGGACGACAG                         GACATGCTCTTGCTATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: GCTGTGTTTC-CTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: gi|13382055|gb|BG458730.1|BG458730
EST:     CCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG                         GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: CCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: gi|211089696|gb|FL030415.1|FL030415
EST:     TTCCTAATGGGACGACAG                         GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: TTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: gi|211089695|gb|FL030414.1|FL030414
EST:     GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG                         GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: gi|211089690|gb|FL030409.1|FL030409
EST:     GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG                         GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: gi|211089694|gb|FL030413.1|FL030413
EST:     TTCCTAATGGGACGACAG                         GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: TTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
EST: gi|71439289|gb|DR820339.1|DR820339
EST:     GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAG                         GACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG
genomic: GAAAGGCCACATTGCACTAGACATTGCTGTGTTTCCTAATGGGACGACAGgtgagtttgt ... aagtttgcagGACATGCTCTTGATATTCTTTCACGAGCACCACTCTGGAGAGAGGGTCTTG