1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTCCATTCGCGCCCATGGGGTGCTTCCAGTCCAAGGTGGCGGGGCCCCTGCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAAGCCTGCAGATCCCGgtaaccgtcacgccccctcccccgctgccgcttaaaccctaacgcccggccaccgaatccatctaaccggcacgcgctcgcgtctgctttgctgtgtccaatcgaatggcag
species | Zea mays |
transcript | GRMZM2G169080_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAAGCCTGCAGATCCCG AGGCGGCGAACGGCGCCGCCGACGGGGGAGGCGACGGCGACGACAAGGAGGEST: gi|26456110|gb|CA827693.1|CA827693
genomic: GCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAAGCCTGCAGATCCCGgtaaccgtca ... cgaatggcagAGGCGGCGAACGGCGCCGCCGACGGGGGAGGCGACGGCGACGACAAGGAGG
EST: GCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAAGCCTGCAGATCCCG AGGCGGCGAACGGCGCCGCCGACGGGGGAGGCGACGGCGACGACAAGGAGGEST: gi|211213476|gb|FL339709.1|FL339709
genomic: GCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAAGCCTGCAGATCCCGgtaaccgtca ... cgaatggcagAGGCGGCGAACGGCGCCGCCGACGGGGGAGGCGACGGCGACGACAAGGAGG
EST: GCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAAGCCTGCAGATCCCG AGGCGGCGAACGGCGCCGCCGACGGGGGAGGCGACGGCGACGACAAGGAGG
genomic: GCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAAGCCTGCAGATCCCGgtaaccgtca ... cgaatggcagAGGCGGCGAACGGCGCCGCCGACGGGGGAGGCGACGGCGACGACAAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCCATTCGCGCCCATGGGGTGCTTCCAGTCCAAGGTGGCGGGGCCCCTGCCGCCCAACGACGCCGCCGCGCTCCCCGCCGACAAGCCTGCAGATCCCGgtaaccgtcacgccccctcccccgctgccgcttaaaccctaacgcccggccaccgaatccatctaaccggcacgcgctcgcgtctgctttgctgtgtccaatcgaatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT