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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCTGTGCTCGCGCTCCTCACCGGATGCGCTTCTGCGGCGAGCCGGGGCGCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatctgatctccctcccactctgctctctccttcgccaaaccctaggtcacgcgggagtttgatggctgtgtgatttcgtatgtctattag

Basic information

species Zea mays
transcript GRMZM2G168506_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168506_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g27340.2 (Oryza sativa), 5'ss of exon 1
CGGCTGTGCTCGCGCTCCTCACCGGATGCGCTTCTGCGGCGAGCCGGGGCGCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatctgatctccctcccactctgctctctccttcgccaaaccctag--gtcacgcgggagtttgatggctgtgtgatttcgta---tgtctattag------
     ||||||||     |  ||   | |||  | |||||| |  | |||   ||  | || |||||||||||||| || || ||||| ||||||||||||||    | |||   |   |        |||||||  || |    || | |   || ||| |    ||   |   ||| ||| || |     | |  || |      
TCCTGGTGCTCGCCGGAGTGGCCTCCTCCGCCGCCGCGGCGGGGAGCGGCCGCGGCGCATTTGACCCATCCCGCGTCGTGCAGCTCTCGTGGCGCCCCAGgtga--gtgtgacgactgacgagacgatctctctctctctctcccccatggccatcccgccgcgaattagggttcgtgcgatatcctgacccgccgcttcgttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211165313|gb|FK988373.1|FK988373
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|94475796|gb|EB704754.1|EB704754
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|18384715|gb|BM417914.1|BM417914
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|50334167|gb|CO529293.1|CO529293
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|211166978|gb|FK988389.1|FK988389
EST:     GCYGGTTCCTTCSMCCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|61118824|gb|DN559785.1|DN559785
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|211165314|gb|FK988374.1|FK988374
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|211165312|gb|FK988372.1|FK988372
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|211166970|gb|FK988381.1|FK988381
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
EST: gi|211166976|gb|FK988387.1|FK988387
EST:     GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAG                         GGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT
genomic: GCTGGTTCCTTCGACCCATCCCGCGTGGTTCAACTCTCTTGGCGCCCCAGgtggcgatct ... tgtctattagGGCGTTCTTGCACAAGGGTTTCCTGTTGGATGCGGAGTGCGACCACCTCAT