1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAGCGCCAGGAACTGTAGTTTCGTCCTCGCGGCCTTCTCTCCCTCCAGTCGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctcttctgacttccagcggatctctcgatgtcgcttctctagacgatttacggaccgaatctgttcgcacttacttgttaggccgtactacccaa...
species | Zea mays |
transcript | GRMZM2G168252_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211141410|gb|FL260967.1|FL260967
genomic: CAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|32864163|gb|CF003845.1|CF003845
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|32859161|gb|CD998842.1|CD998842
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|28982615|gb|BQ539401.2|BQ539401
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211142842|gb|FL260983.1|FL260983
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACKACNACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAANCACCTTTCCTGAACAACCTGACGGGGAAGCCEST: gi|5607679|gb|AI901346.1|AI901346
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAA-AACCTTTCCTGAACAACCTGACGGGGAAGCC
EST: CGCCGACGAGCGACGACAACCGTTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211144268|gb|FL260991.1|FL260991
genomic: CGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATWCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211141405|gb|FL260962.1|FL260962
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACCGTTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211144276|gb|FL260999.1|FL260999
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|33094679|gb|CF054673.1|CF054673
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|18163186|gb|BM333025.1|BM333025
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTTTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|32856286|gb|CD995967.1|CD995967
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTNNGGGGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGEST: gi|32935643|gb|CF040455.1|CF040455
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACT---GTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAG
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211142836|gb|FL260977.1|FL260977
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211142832|gb|FL260973.1|FL260973
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|9731866|gb|BE510618.1|BE510618
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|18170962|gb|BM340802.1|BM340802
genomic: CGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGATGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211141409|gb|FL260966.1|FL260966
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211142834|gb|FL260975.1|FL260975
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|32913432|gb|CF018244.1|CF018244
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211142846|gb|FL260987.1|FL260987
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACCGTTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211144275|gb|FL260998.1|FL260998
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACCGTTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211144269|gb|FL260992.1|FL260992
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211144267|gb|FL260990.1|FL260990
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211141413|gb|FL260970.1|FL260970
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211144272|gb|FL260995.1|FL260995
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|211142843|gb|FL260984.1|FL260984
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACNAGCGACGACNACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|32839007|gb|CD978688.1|CD978688
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|32945393|gb|CF050212.1|CF050212
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGTTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|31405642|gb|CD484374.1|CD484374
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|32935872|gb|CF040684.1|CF040684
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCTEST: gi|16917997|gb|BM073532.1|BM073532
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
EST: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCG ACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
genomic: CGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctctt ... ttttgagcagACTGTGCCAGTTAACCCAAAACCTTTCCTGAACAACCTGACGGGGAAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGCGCCAGGAACTGTAGTTTCGTCCTCGCGGCCTTCTCTCCCTCCAGTCGAACCGCGCCGACGAGCGACGACAACTGCTGCTGCATTCTTCAATGGCGgtacgctcttctgacttccagcggatctctcgatgtcgcttctctagacgatttacggaccgaatctgttcgcacttacttgttaggccgtactacccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC