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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACACCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgggcactgtcgacagctactagctcagctcagacacacctttccttgttgtctattgcacgtactgtacctgtcgctttgccatgtcacgtaacgt...

Basic information

species Zea mays
transcript GRMZM2G168229_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168229_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g08070.1 (Oryza sativa), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACACCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgggc--actgtcgacagctac-tagct--cagctcagacacacctttccttgttgtctattgcacgtactgtacctgtcgctttgccatgtcacgtaacgt
||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||  ||||||||||||||||||||||||||||||||| ||||||||||  |  |  |       || | |  | |||  ||| |  ||| || |   |     ||||  |  || ||   | |||    ||   ||||   |||| |    
AGCACTACCACCGCCGCCACAAGGTCTGCGACTTCCACGCCAAGGCCGCCGCCGTCCTCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAGTGCAGCAGgttagctccgatcccgcgcaaccatgtcgctgccaggtgggacccagcaggcacacgtgtcgctgccaggtg--ggacccagggcacagccaca-cacgcact--

upper sequence: GRMZM2G168229_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACACCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgggcactgtcgaca--gctactagctcagctcagacacacctttccttgttgtctattgcacgtactgtacctgtcgctttgccatgtcacgtaacgt
||||||||||||||||||||||||| |||||||| ||| |||| |||  | |||||  |||||||||   |   ||||| ||||||||||||||||||||||   ||    |        | | |   |     | |    || |  || |||   ||   | |       | |  || ||  ||  ||     | || | |
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatcattgagttcagctccctcgggggcatttg-cgtcttttcacactcc-tacctt

upper sequence: GRMZM2G168229_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G14610.1 (Glycine max), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACACCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgggcactgtcgacagctactagctcagctcagac-acacctttccttgttgtctattgcacgtactgtacctgtcgctttgccatgtcacgtaacgt-
||||||| ||||||||||||||||| |||||||| ||| |||| |||  | |||||  ||||||||||  |   ||||| ||||||||||||||||||||||   ||   ||        | |     |  |  | |   || |  || |||   ||   | |       | || | |||  ||   |   ||| || | | 
AGCACTATCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGCTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggtgctagtttgttcctcaccgtcggaaattgcatcaatcattgagttcagctccctcgggggcactt-tcgtctttttaca-cacctaccttt

upper sequence: GRMZM2G168229_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv15s0021g02300.t01 (Vitis vinifera), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACACCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAATGCAGCAGgtacgggca--ctgtcgacagctactagctcagctcagacacacctttccttgttgtctattgcacgtactgtacctgtcgctttgccatgtcacgtaacgt--
|||| ||||||||||||||||||||||||||||||||| |||| |||    | |||  |||||||||   |   |||||||||||||| ||||| ||||||| |  |||   |  | | |    ||   |||   ||   | || |     | ||   | |   |   | |  |     |||    |||     |  | |    
AGCATTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCTACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAGgttctcgcaaattaccaaaacacccttattca---caacgaaacttccagctatttaatctaataaaaaataaaatcaacgcaa-accaaaattcaaagcaagt