1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCGACGCCGTGCCTGACTCCGCGGCCTCCAGGGCCGCGGTGGCGCCGTTTAGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctccctttttttcccctcatgcagtgtcgtgcctcgtttcctgtggtgtatgaggatgattccattcactcgtgcgtgctcgacgtag
species | Zea mays |
transcript | GRMZM2G168176_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|211512372|gb|FL212647.1|FL212647
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGCTGTCGATGCTCCCGCACGCGAAGAAEST: gi|13198570|gb|BG354387.1|BG354387
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGEST: gi|148943696|gb|EC888763.2|EC888763
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACG
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|76289778|gb|DV029346.1|DV029346
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|76285403|gb|DV024971.1|DV024971
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|71325419|gb|DR799392.1|DR799392
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|71307148|gb|DR789745.1|DR789745
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|28930902|gb|CB334263.1|CB334263
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|78121527|gb|DV539911.1|DV539911
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|89759058|gb|DY688001.1|DY688001
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|6827088|gb|AW330731.1|AW330731
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: CCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGCTATCGATGCTCCCGCACGCGAAGAAEST: gi|76283913|gb|DV023481.1|DV023481
genomic: CCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAAEST: gi|78180563|gb|DV550891.1|DV550891
genomic: AGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
EST: TACTCATCACCTGCTCCCGCCGCATCACGTACAG GTATCGTCATCTGATGCAGGACGTGCTATCGATGCTCCCGCACGCGAAGAA
genomic: TACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctc ... ctcgacgtagGTATCGTCATCTGATGCAGGACGTGTTGTCGATGCTCCCGCACGCGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGACGCCGTGCCTGACTCCGCGGCCTCCAGGGCCGCGGTGGCGCCGTTTAGGAACAGGGAGAAGGTACTCATCACCTGCTCCCGCCGCATCACGTACAGgtgagtgctccctttttttcccctcatgcagtgtcgtgcctcgtttcctgtggtgtatgaggatgattccattcactcgtgcgtgctcgacgtag
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