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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactgaggttcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgctgatggacgcacgtatgcaccgcacgcag

Basic information

species Zea mays
transcript GRMZM2G168143_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 1
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactgaggttcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgctgatggacgcacgtatgcaccgcacgcag
| |||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||| |||     |||    |||  |   |  ||      | |   |   | |  ||   |||    ||  | |  |   ||   |  |  || |                           
AGGCCCAAGGAGCCCTACGTCGGCAAGTGCCTCCTCAACACCAAGATCACCGCCGACGACGCGCCCGGCGAGACATGGCACATGGTCTTCAGCACCGAGGgt-----ctgtaactcatcatccatcctatccaatccaatccaatccaatc---caatccttgattactcac--tactcaggattgcag---------------------------

upper sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G23710.1 (Glycine max), 5'ss of exon 2
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactgaggttcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgctgatggacgcacgtatgcaccgcacgcag--------------
|| ||||||   || ||||| || || ||||| |||||||| |||||||| || || || || || || || || ||||||||||||||||||||||| ||| ||     | | |||         |   | ||| |     | ||| ||   |  ||  |       |  |    |  ||    | | |     |    | ||  |   |   ||              
AAACCCAAGACCCCTTACGTTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttgg-----atgctcattcgttttccctctattttcctttcctttcttttactttaccccccatagagcgtaaagtagattgctgataaaatttgtgtttttgagctaaaattagtgttattattgcag

upper sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtagg-tactgaggttcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgtattcgta--tcgtatgtataaacgctgatgga-cgcacgtatgc-accgcacgcag--------------
|| ||||||   || ||| | || || ||||| |||||||| |||||||| || || || || || || || || ||||||||||||||||||||||| ||| || | || |  |||             |||||   |   | |||| ||  ||   ||      | | ||    |||      |  ||||||  |      || |   | |  |   ||              
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctca--ttcgttttc--cctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag

upper sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA11G08230.1 (Glycine max), 5'ss of exon 2
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactgaggt-------tcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgt-----attcgtatcgtatgtataaacgctgatggacgcacgtatgcaccgcacg-cag
|| |||||| | || ||  | || ||||| || |||||||| |||||||| || || || || || || || || |||||||||||||||||||| || ||||||| || |  |       ||  ||    | ||  ||||  |  |     || |    |  |  ||| |     | ||      | ||  ||||     |   |      |||       |   |||
AAACCCAAGAACCCATATATTGGTAGGTGTCTTCTCAACACAAAGATCACTGGGGATGATGCACCTGGAGAAACTTGGCACATGGTCTTCAGCACTGAGGgtaggtgcttaaatatttttctctcaattttacctttttttcccgtcactaatcataacatggatcgcttttaaaaagtcagggtttttgggtaaattaaaaaaaatatgtatatttgtattatttcag

upper sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 2
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactgaggttcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgctgatggacgcacgtatgcaccgcacgcag
|| || ||| | || |||   ||  | |||||  | ||||||||||||||||| || ||||| || || ||||| |||||||| ||||||| |||||||||||  | |     ||  |       | ||||| |   |        | ||  ||| |  |    ||| |  | |  ||  | |   || | |   |                    
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaatt--agggggcttttgattgtattttttagaggcattt-ttcgagggagagatttgattaggttggttgatgacttaggtgag--------------------

upper sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT5G66190.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactgaggttcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgctgatggacgcacgtatgcaccgcacgcag
|| || ||| | || |||   ||  | |||||  | ||||||||||||||||| || ||||| || || ||||| |||||||| ||||||| |||||||||||  | |     ||  |       | ||||| |   |        | ||  ||| |  |    ||| |  | |  ||  | |   || |                          
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaatt--agggggcttttgattgtattttttagaggcattt-ttcgagggagagatttgattaggttggttgatgacttag-------------------------

upper sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 2
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgt-aggtactgaggttcaaaaaaaaatct-gatttttgctgc-ctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgc-tgatggacgcacgtatgcaccgcac-gcag-----------------------
|  |||||| | || ||| |||| |  || ||||||||||||||||| || || ||||| || || || ||||| ||||||||||| |||| ||| || ||| || | ||           |    ||| |||  |||  |   |  ||  ||| ||   ||  | || |  | | |||  | | ||    | ||||    |    ||||    |  |  |                       
AGACCCAAGAATCCTTACATCGGAAAATGTCTCCTCAACACCAAGATTACTGGAGACGATGCTCCAGGAGAGACCTGGCACATGGTATTCACCACTGAGGgtcagcttctttaccatgcctatctctcttgataattgaaggatttcttttttcttttttcttttataattttttagtagttgtgaataaattatgggattattcttgcatttgattgttgcgttggataatctgataaaacag

upper sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 5'ss of exon 2
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtact------gaggttcaaaaaaaaatct---gatttttgctgcctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgctgatggacgcacgtatgcaccgcacgcag---------------------
||||| ||| | || ||| | ||||| || || |||||||| ||||||||||| || || || || || || || ||||||||||||||||||||||| ||||   ||         | | ||   | | || |    | ||   | |   | |   |   || |  ||     || |  |  | |   | | ||||  ||    |   | ||  | | |                          
AAGCCTAAGAATCCTTACATTGGCAGATGTCTTCTCAACACTAAGATCACCGGGGATGATGCTCCTGGAGAAACATGGCACATGGTCTTCAGCACCGAGGgtaacgaccttttacatgctccatgtatatatattggaaattcaacagaaccatctttaattttatgtggaacttttgagttttttagctgatcgctcctgatttct--tttgagctgaatttgattggtcaattgggttgctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71441572|gb|DR822622.1|DR822622
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|91056042|gb|EB166460.1|EB166460
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|89758955|gb|DY687935.1|DY687935
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|149083857|gb|EE173232.2|EE173232
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|8929977|gb|BE224741.1|BE224741
EST:     ACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAGGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: ACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|93015751|gb|EB641271.1|EB641271
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|148932036|gb|EC875356.2|EC875356
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|148939854|gb|EC884563.2|EC884563
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|76923047|gb|DV169308.1|DV169308
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|37420288|gb|CF647834.1|CF647834
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|148952933|gb|EE152405.2|EE152405
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|50327429|gb|CO522555.1|CO522555
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|9956136|gb|BE643570.1|BE643570
EST:     ACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAGGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: ACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|76280879|gb|DV020447.1|DV020447
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|89756101|gb|DY686266.1|DY686266
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|149112200|gb|EE191272.2|EE191272
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|74242655|gb|DT650569.1|DT650569
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|71304994|gb|DR788635.1|DR788635
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|94475152|gb|EB704110.1|EB704110
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
EST: gi|91047927|gb|EB158345.1|EB158345
EST:     CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAG                         GCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG
genomic: CGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactg ... ccgcacgcagGCAAGATCCCGTACAGAGAAGGCCAGTCCATCGGCGTCATCGCCGATGGCG