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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAGATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgttttcagaaatcaatgatacacagcaatgcaagataccatcaaacggtgaatcctctagcacacaaccatctcagtgggtggggattttgtg...

Basic information

species Zea mays
transcript GRMZM2G167999_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167999_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g06810.3 (Oryza sativa), 5'ss of exon 6
ATGCAGATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgttttcagaaatcaatgatacacagcaatgcaagataccatcaaacggtgaatcctctagcacacaaccatctcagtgggtggggattttgtg-
       || || || || || || ||||||||||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||   ||   || |   ||||| | |        |  || || |  | | ||      |||| ||| |   ||||        |      |  |  
------GTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAAACTTAGTGCTCCACGGATATTGCGGATTCACAAAgtaagattgctttgaaatttcttgatatatactcccaatatgtagcaacctaggatgggattcctaggaca-acgaatctggacataagaacccatcctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32919528|gb|CF024340.1|CF024340
EST:     ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG                         GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA