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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCGTGGCGCTTAAACCCTAGATCTGTGCCTCCGCGCTGGCCGCGGCCGCGTCCCGACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAGgtgacgatcgattgctgattgctgcggatcgcgtaccgtggtcacgctgcttagttcagctctaacaactgatcgctcctcctccactgttaccgattaa...

Basic information

species Zea mays
transcript GRMZM2G167999_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344544|gb|FL091812.1|FL091812
EST:     GCGTCCCGACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAG                         GTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
genomic: GCGTCCCGACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAGgtgacgatcg ... tgctttgcagGTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
EST: gi|22489370|gb|BU049293.1|BU049293
EST:     GCGTCCCGACGCCGGCACGCCGCCGATCGCCGCTCGTCGCTCGATCCCAG                         GTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
genomic: GCGTCCCGACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAGgtgacgatcg ... tgctttgcagGTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
EST: gi|18384200|gb|BM417399.1|BM417399
EST:     GCGTCCCGACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAG                         GTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
genomic: GCGTCCCGACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAGgtgacgatcg ... tgctttgcagGTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
EST: gi|88758366|gb|DY542735.1|DY542735
EST:     GCGTCCCGACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAG                         GTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
genomic: GCGTCCCGACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAGgtgacgatcg ... tgctttgcagGTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
EST: gi|60397544|gb|DN230360.1|DN230360
EST:     GACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAG                         GTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT
genomic: GACGCCGGCACGCCGCCGATCGCCGCACGTCGCTCGATCCCAGgtgacgatcg ... tgctttgcagGTTTTGCCGCTCGAGTTTAGATAAGTTCCTTCAATGCATCGTGTTGGGAGT