Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGTGTACAACATTGCTCCGTACATGAAATTTCATCCTGGAGgtaatcttagtttcaatttattcagacttgttctttttgagtttcagaaccactgttctcatctcacaagtggcaacctttttctgtattatggtacattttcctaacctgaatcatattttgggttgatttgcag

Basic information

species Zea mays
transcript GRMZM2G167946_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167946_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g12830.2 (Oryza sativa), 5'ss of exon 3
--------------------------------------------------------CCGCGTGTACAACATTGCTCCGTACATGAAATTTCATCCTGGAGgtaatctta-gtttcaatttattcagacttgttctttttgagt---ttcagaaccactgttctcatctcacaagtggca-acctttttctgtattatggtacattttcctaacctgaatcatat---tttgggttgatttgcag
                                                         || ||||||||||||||||||||||||||||||||||| |||||||| | || |||| ||  |  |  |   |  |  |||    |   |||  | |  |||||| | | |||||| |     |   ||    ||  |||  | | | |   | |  || | ||  |   |||  |   ||||||||
CTAGAAGAAGTTAAACAGCATAAAACAGGAGATAGTATTTGGACTGTTTTGAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataagttttaacctgatgtggaatacttgtttcagttcttttcgtagctgctgttcacct-tcacaatttctgcagacttcagagtgctata-tgcttctattttatgtgtaacaagtacttttatgggcatttgcag