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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTCTTCAGATCTAGGGTTCTCTCGTGCTCTGTTCTCATCTTCTGCTCGCTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctcccccctatccatcccccatgggttagtggtgtagactggggaaggatctccctttaccctcacgcgaagcaaaatcctatccccttaatc...

Basic information

species Zea mays
transcript GRMZM2G167932_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211109944|gb|FL138530.1|FL138530
EST:     CTGGTGTCCCCTCTCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211278448|gb|FL138641.1|FL138641
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTSGGGACTTACTTCCTGCGGAACTACT
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACT
EST: gi|211288514|gb|FL071829.1|FL071829
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCG
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCG
EST: gi|211288515|gb|FL071830.1|FL071830
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACNACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211110863|gb|FL138547.1|FL138547
EST:     CTGGNGNCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211288518|gb|FL071833.1|FL071833
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211282050|gb|FL138662.1|FL138662
EST:     TGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGTGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTAC
genomic: TGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCG-GCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTAC
EST: gi|211111781|gb|FL138561.1|FL138561
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211288520|gb|FL071835.1|FL071835
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACNACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211288519|gb|FL071834.1|FL071834
EST:     CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
EST: gi|211288510|gb|FL071825.1|FL071825
EST:     CTGGTGTCCCCTCTCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAG                         GTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC
genomic: CTGGTGTCCCCTCCCTCTCACCCATGGCTTCGGCGGCGGCGGCAACTCAGgtactccctc ... ggcttggcagGTGGGGACTTACTTCCTGCGGAACTACTACAACCTGCTGCAACAAACCCCC