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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcctgctgccaccatatttcgggacccagatttcatctcatcagttatactagtataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag

Basic information

species Zea mays
transcript GRMZM2G167872_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 1
CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcctgctgccaccatat-ttcgggacccagatttcatctcatcagttatactag--tataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag
||||||||| || || ||||||   || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     |||    |  ||   |  ||   |     || |||| ||||   | |||  |     | ||||   ||   | | |                                                                              
CGACCCCGCCCCTCCCCACCTCCATGGCCGCATCTCCTTCCACCGCCTCAACATCAAGAACGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtctctccctctctctccctcctgctctcaatttcaatctcatttcatttctgataacacgccttgattccggatctgcgtag------------------------------------------------------------------------------

upper sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G30490.2 (Glycine max), 5'ss of exon 1
-CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgag--agcctgctgccaccatatttcgggacccagatttcatctcatcagttatactagtataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag
   ||||| | | ||  |     ||    ||||||   ||||| ||||||||||||||| | || ||| | ||||| ||||||||||| ||| | |||||||| |   ||    |  |     |  |||  ||| |    | || |     |  ||| |   |||   |||  ||  | ||  ||      |  |  || | |                                                          
GGAACCCCACAC-GCTCCCTTGGGCCTCTCGCATCCAGTTCCATCGCCTCAACATCAAGCACGATTCCCGTCTCGAAGGCCTCATCAAAATGTCAGATCTGgtaaattagttatccactttttttattccagacac--cctccaacgttaaaaatatgcggatattgctcatcatagagtta-taagattgatttaatggttca---------------------------------------------------------

upper sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA11G19550.1 (Glycine max), 5'ss of exon 1
CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcctgctgccaccatatttcgggacccagatttcatctcatcagttatactag-tataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag
|| |    | || |  |     || || |||||| ||||||||||||||||||||||  | |||||  | ||||| ||||||||||||||||| ||||| || | |      |  || ||| | ||          |||| | | ||    | ||||   |||  |||| | |    ||  |     |     ||| | | ||||   |   ||  || ||| |                                   
CGCCGATTCCCCCCTCCCTTGGGCTGGCCGCATCACCTTCCACCGCCTCAACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataa-----taacatcatttctc-----tttcttttctttttattctctttactccctatctttcattttttgttttattattcatttactctac-ctcactt--ggtgtctctctctttcag---------------------------------

upper sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G08930.1 (Glycine max), 5'ss of exon 1
CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcctgctgccaccatatttcgggacccagatttcatctcatcagttatac-tagtataatt-caatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag
||| ||| |     | | |   || || |||||| ||||||||||||||||||||||  | |||||  | ||||| ||||||||||||||||| ||||| || | |     || |     | ||||    ||     ||  | | ||    | ||| | ||||  || |  | | |  ||                                                                                
CGAACCCTCCGATTCCCCCTGGGCCGGCCGCATCACCTTCCACCGCCTCAACATCAAACACGACTCTCGCCTCGAAGGCCTCATCAAGATGGCAGATCTCgtaataatac-cttcttttctctttcttttcct---ctttgttttattttctttacatcgtatcgtttctttctccgtttcag-----------------------------------------------------------------------------

upper sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 1
CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcctgctgccaccatatttcgggacccagatttcatctcatcagttatactagtataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag
||| ||  |  |||  |      | |  |||||    || |||||| ||||||||||| | || || |||||||| || |||||||||||||| ||||||||        | |    ||  |||||     |  |  ||    |   || || |   | | | | ||||| ||       | |      | | | |                                                              
CGAGCCGTCTACGCATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgt------tcgttattccccaatttctatttcttgcattggattttgcatttcttggattttgaatcaatttgtggcgttttctttggtaatgcag--------------------------------------------------------------

upper sequence: GRMZM2G167872_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 1
CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcctgctgccaccatatttcgggacccagatttcatctcatcagttatactagtataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag
||| || ||  | |  |      | |  |||||    || |||||| ||||||||||| | || || |||||||| || |||||||||||||| ||||||||  | |  | |  |     ||||||  |     |||||      ||   || || |  | ||  ||||| ||       | |      | | | |                                                              
CGAGCCGGCTGCACATCCTTGGTCCGATCGCATTCAGTTTCACCGCATCAACATCAAGCACGATTCGAGGCTCGAAGGACTCATCAAGATGGCAGATCTGgttcgtgattccctcgtttctatttcttgcattggattttga---atttcttgtattt-tgta--tcaatttgtggcgttttctttggtaatgcag--------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148943583|gb|EC888646.2|EC888646
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|20506746|gb|BQ279324.1|BQ279324
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|27522070|gb|CA989176.1|CA989176
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|148962548|gb|EE013424.2|EE013424
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|148970721|gb|EE021451.2|EE021451
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|149086979|gb|EE176522.2|EE176522
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|67029504|gb|CO458253.1|CO458253
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|71439580|gb|DR820630.1|DR820630
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|211380446|gb|FL321676.1|FL321676
EST:     ATCAAGAATGA-TCCCAGGCTCGAGGGCCTCATCAAGATTGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCCACGCCGGCGGACTACAACACGCGCCC
genomic: ATCAAGAATGACTCC-AGGCTCGAGGGCCTCATCAAGAT-GGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGC-ACGCCGGCGGACTACAACACGCGCCC
EST: gi|71766528|gb|DR964465.1|DR964465
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|148958112|gb|EC904309.2|EC904309
EST:     ATCAAGAATGACTCCAGGCTCGAGGGGCCTCATCAAGATGGCCGATTCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTAACAACACGCGCC
genomic: ATCAAGAATGACTCCAGGCTCGAGGG-CCTCATCAAGATGGCCGAT-CTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTA-CAACACGCGCC
EST: gi|61118009|gb|DN558970.1|DN558970
EST:     GCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTAGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCC
genomic: GCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCT-GGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCC
EST: gi|76936818|gb|DV174915.1|DV174915
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|211107778|gb|FL330267.1|FL330267
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|148936214|gb|EC880288.2|EC880288
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|61118010|gb|DN558971.1|DN558971
EST:     GCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: GCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|29577199|gb|CB617311.1|CB617311
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|211149330|gb|FL312588.1|FL312588
EST:     ACATCAAGAATGACTCCNGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATC-AACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCC
EST: gi|89761380|gb|DY689416.1|DY689416
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|5555461|gb|AI881412.1|AI881412
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|28987409|gb|CB351619.1|CB351619
EST:     ACATCAAGAATGACTCCAGGGTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCGTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACC-TGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCC
EST: gi|149089336|gb|EE178568.2|EE178568
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|149048837|gb|EE048337.2|EE048337
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|71439581|gb|DR820631.1|DR820631
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|89755202|gb|DY685718.1|DY685718
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|149013844|gb|EE043324.2|EE043324
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|78088132|gb|DV516525.1|DV516525
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
EST: gi|149080038|gb|EE169058.2|EE169058
EST:     ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTG                         ACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC
genomic: ACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 263

CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGATGCACTCCCAGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 86

CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGATGCACTCCCAGTG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 60

CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGATGCACTCCCAGTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 276

CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcct ... ggatctgaagACCATCAACCTGGCGGCTATCTGCACGCCGGCGGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGATGCACTCCCAGTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGACCCCGCGCCGCCGCACCTCGCGGGGCGCATCTCCTTCCACCGCCTCAACATCAAGAATGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGgtgagagcctgctgccaccatatttcgggacccagatttcatctcatcagttatactagtataattcaatatgcacttggtacccaaaaagttctgctcccactcaagaattccttcccttcccatctcctgctgctgcttgggtggtggatctgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG