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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCAATCTCACCCCTCCCTCTAAACCCGCAGGCCGCAGTAGCGCCGCTACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgccttctcccccgcgccctcttccaaggttcgagctagggtttctgcgtgtttgctcagatttcattgttttgatctcag

Basic information

species Zea mays
transcript GRMZM2G167356_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211045050|gb|FL383276.1|FL383276
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|148946214|gb|EC891510.2|EC891510
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|211107234|gb|FL370789.1|FL370789
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|148932748|gb|EE285380.2|EE285380
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|148939672|gb|EC884331.2|EC884331
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|148935082|gb|EC879124.2|EC879124
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|78116552|gb|DV534939.1|DV534939
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|71439287|gb|DR820337.1|DR820337
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|211449696|gb|FL381428.1|FL381428
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|211319685|gb|FL416782.1|FL416782
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCATAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|78108850|gb|DV527267.1|DV527267
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|71427627|gb|DR808677.1|DR808677
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|71432722|gb|DR813772.1|DR813772
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
EST: gi|78076701|gb|DV505135.1|DV505135
EST:     ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAG                         GCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC
genomic: ACGGTTTGCTCAGGATTCGAACCCCACCTTCTGATTGCTCCGAATCCGAGgtaacccgcc ... ttgatctcagGCGGCGGTTGCGCAGAAGTTTGCGGCATGGCGGGGTACCCGGAGGACAACC