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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGCTTTTAGTGACGGCATCAGCGGTTTCCCCTCCCGCCTCTTGCCAGTCCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcctccatctctcctcccgcctccggtggatcgtcgacggcgctcagccccggcggcagagccgcgtgccgcggcctgcgggcagcgggagccagccagcagctgctgctcccgcgcgaagcgtgcgcttagcgccgccttttggaaccctgatgcaatatgtaacccatgtctttattttcttcctttatag

Basic information

species Zea mays
transcript GRMZM2G166345_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22935750|gb|BU572025.1|BU572025
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305850|gb|FL207358.1|FL207358
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305838|gb|FL207346.1|FL207346
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305848|gb|FL207356.1|FL207356
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|9953234|gb|BE639817.1|BE639817
EST:     CCATCGCGCCCTCGCCTCGGGTCCTTTGTTACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCATCGCGCCCTCGCCTCGGGTCCTCTG-CACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165089|gb|FL207337.1|FL207337
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|71436812|gb|DR817862.1|DR817862
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|93012239|gb|EB637759.1|EB637759
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165084|gb|FL207332.1|FL207332
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|91874367|gb|EB404324.1|EB404324
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|71320983|gb|DR797210.1|DR797210
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165094|gb|FL207342.1|FL207342
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211307866|gb|FL207361.1|FL207361
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211307864|gb|FL207359.1|FL207359
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|93280899|gb|EB673163.1|EB673163
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165091|gb|FL207339.1|FL207339
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|4753387|gb|AI657292.1|AI657292
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305841|gb|FL207349.1|FL207349
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|88756567|gb|DY540708.1|DY540708
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|89248432|gb|DY620218.1|DY620218
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|87155285|gb|DY400074.1|DY400074
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|32913166|gb|CF017978.1|CF017978
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211272769|gb|FL461429.1|FL461429
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|91873663|gb|EB403620.1|EB403620
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|94477637|gb|EB706595.1|EB706595
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165086|gb|FL207334.1|FL207334
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|32943874|gb|CF048693.1|CF048693
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165095|gb|FL207343.1|FL207343
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165092|gb|FL207340.1|FL207340
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|149110255|gb|EE190312.2|EE190312
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|86469720|gb|DY236090.1|DY236090
EST:     CCCATCGCGCCCTCGCCTCGGGCCCTCTGCACACCGCCCAGTGACCTTGC                         GTGATGGAGTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGAAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|76286901|gb|DV026469.1|DV026469
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305846|gb|FL207354.1|FL207354
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211312192|gb|FL106313.1|FL106313
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|61118563|gb|DN559524.1|DN559524
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165090|gb|FL207338.1|FL207338
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211533214|gb|FL395813.1|FL395813
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305849|gb|FL207357.1|FL207357
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305843|gb|FL207351.1|FL207351
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|89756895|gb|DY686739.1|DY686739
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305844|gb|FL207352.1|FL207352
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211307865|gb|FL207360.1|FL207360
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165088|gb|FL207336.1|FL207336
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211165087|gb|FL207335.1|FL207335
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|94473723|gb|EB702681.1|EB702681
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|211305842|gb|FL207350.1|FL207350
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACTGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|78112560|gb|DV530954.1|DV530954
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
EST: gi|26559559|gb|CA831794.1|CA831794
EST:     CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGC                         GTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA
genomic: CCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 157

CGGGCTTTTAGTGACGGCATCAGCGGTTTCCCCTCCCGCCTCTTGCCAGTCCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAACAGCATGCATTGCTTGATAATCTTAATCAGGAATTGTCCCAGAAGTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 100

CGGGCTTTTAGTGACGGCATCAGCGGTTTCCCCTCCCGCCTCTTGCCAGTCCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAACAGCATGCATTGCTTGATAATCTTAATCAGGAATTGTCCCAGAAGTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 92

CGGGCTTTTAGTGACGGCATCAGCGGTTTCCCCTCCCGCCTCTTGCCAGTCCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAACAGCATGCATTGCTTGATAATCTTAATCAGGAATTGTCCCAGAAGTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 90

CGGGCTTTTAGTGACGGCATCAGCGGTTTCCCCTCCCGCCTCTTGCCAGTCCCATCGCGCCCTCGCCTCGGGTCCTCTGCACACCGTCCAGTGACCTTGCgtgcgtgcct ... tcctttatagGTGATGGACTGGATAAAGTTTTGCAGCGATTTTACCGCAAGTGATGGGAAACAGCATGCATTGCTTGATAATCTTAATCAGGAATTGTCCCAGAAGTCTG