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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCGACGAGCGGCTCCGGCCCGGGGAGCTGGAGCCGCAGCACGTCGCCGTCAAGTTCCTCGACGCCGACGGGCAGCAGGGCCACCGCGAGTGGCTGgtacgtacggacgcgcgcgtgcactgtgctgtggctagcatgcgtgcgtgcttaatgctaacgatggatggatggatggatgcag

Basic information

species Zea mays
transcript GRMZM2G166027_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166027_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g53750.1 (Oryza sativa), 5'ss of exon 1
CTTCCTCGACGAGCGGCTCCGGCCCGGGGAGCTGGAGCCGCAGCACGTCGCCGTCAAGTTCCTCGACGCCGACGGGCAGCAGGGCCACCGCGAGTGGCTGgtacgtacggacgcgcgcgtgcactgtgctgtggctagcatgcgtgcgtgcttaatgctaacga--tggatggatggat-ggatgcag
|||| ||||||    |||||| |||||    ||  | || ||||||||||||||||||| |||||||| ||| ||  | |||||||||||||| |||||||||||||| || |       |   |   || || | |  ||  || || | |    |||||  |  ||  ||| |   |      |||
CTTCATCGACGCCAAGCTCCGCCCCGGCCTCCTCCAACCCCAGCACGTCGCCGTCAAGTACCTCGACGGCGAAGGCGACCAGGGCCACCGCGAATGGCTGgtacgtacaga-gtaattccgtggtactctttgacgataattagt-cgagttcgtagctaattaattgcgtggttttgtcacgcacag