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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGAGCGGCCGCCGCCGGCGAGACAGGGGAGCATGGCGACTTCCTCCTCCTTCACCGCCGTCTTCTTCAGCAGCGCCTTCGCCGCCTGCTTCGCAGAGgtaccgtcagcacacccgcattccttttttctagcctcccgcgggcatcgcatcgcatacatccgtctaagaggcaaagtcgaagtcggagtcggagtcg...

Basic information

species Zea mays
transcript GRMZM2G165629_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165629_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g74640.2 (Oryza sativa), 5'ss of exon 1
CCACGA-GCGGCCGCCGCCGGCGAGACAGGGGAGCATGGCGACTTCCTCCTCCTTCACCGCCGTCTTCTTCAGCAGCGCCTTCGCCGCCTGCTTCGCAGAGgta---ccgtcagcacacccgcattc-cttttttctagcctcccgcgggcatcgcatcgcatacatccgtctaagaggcaaagtcgaagtcggagtcggagtcg
| | || |  ||| |||||  ||   |||     | ||||||   | ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||    ||     ||| || ||  | | |    | | |   |   ||| |  | |  |||    |  |  | |   ||   |  | |     ||  ||  |  
CTAGGAAGTCGCCTCCGCCTCCGCTGCAGACACAC-TGGCGATGGCTTCCTCCTTCGCCGCCGTCTTCTTCAGCAGCGCCTTCGCTGCCTGCTTCGCTGAGgtaagcacgctgcgacatccccaaccgcctcagcccatcggtcgatggggaaagaagagcaactttgtgaatcattcgctgtgatgcaagaaaag--ggcat--