1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCATTCCCTTGCGCGGGACGCGACAACTCCACGCTACACAGTTCACACGCCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgcaacccaccgccacgccttcttctccccccgcgatctacccggcccgggcgccgttgctgctactgctattactaatactactaccgcgtcgtagcggaggcag
species | Zea mays |
transcript | GRMZM2G165535_T05 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATT GEST: gi|71771666|gb|DR969603.1|DR969603
genomic: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgc ... gcggaggcag-
EST: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATT GEST: gi|71771666|gb|DR969603.1|DR969603
genomic: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgc ... gcggaggcag-
EST: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATT GEST: gi|71771666|gb|DR969603.1|DR969603
genomic: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgc ... gcggaggcag-
EST: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATT GEST: gi|71771666|gb|DR969603.1|DR969603
genomic: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgc ... gcggaggcag-
EST: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATT GEST: gi|148950412|gb|EC895979.2|EC895979
genomic: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgc ... gcggaggcag-
EST: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATT GGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGGEST: gi|148943663|gb|EC888727.2|EC888727
genomic: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgc ... gcggaggcagGGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGG
EST: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATT GGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGGEST: gi|76280415|gb|DV019983.1|DV019983
genomic: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgc ... gcggaggcagGGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGG
EST: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATT GGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGG
genomic: CCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgc ... gcggaggcagGGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTCCCTTGCGCGGGACGCGACAACTCCACGCTACACAGTTCACACGCCAAGCGAGGGCCGCATCTAGATCCGCGCCGCCGAGCTGACTTGACTATTgcaagtttgcaacccaccgccacgccttcttctccccccgcgatctacccggcccgggcgccgttgctgctactgctattactaatactactaccgcgtcgtagcggaggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCGCCG