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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGGCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgagttcccctcccctggatccgtttccctatctcaatctcatcctccggtcttgtgctcggaggagctcagtagccaataggggtagaccgcatgtagctcgaaattgtcgagcgtcgcgctgttttgttctcgtgaaatgattttgtgcttctctggggcag

Basic information

species Zea mays
transcript GRMZM2G165535_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165535_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g58580.1 (Oryza sativa), 5'ss of exon 1
GGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGGCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgagttcccctcccctggatccgtttccctatctcaatctcatcctccggtcttgtgctcggaggagctcagtagccaataggggtagaccgcatgtagctcga-aattgtcgagcgtcgcgctgttttgttctcgtgaaatgattttgtgcttctctggggcag
|     ||||||  |  | || | |  |   || ||| ||| |||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||  |       ||| | | | ||||||| |||| |      ||||||||      ||  | ||       || |   | ||   |   | |  | ||   || | |  |  | | | |  | || |    |||| || | | |  ||                       
GAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGgtttc-------cccattctccggatccgcttccgtcatctcatctcatctct---tcccgagc----gatagtttcctcgc---tgcagctgcatcgt-cgttgttgaatgaatcttgttcttctcttcttttttttttgggggtatag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449147|gb|DR830197.1|DR830197
EST:     GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG                         GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
EST: gi|74245816|gb|DT653730.1|DT653730
EST:     GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG                         GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
EST: gi|71299719|gb|DR785870.1|DR785870
EST:     GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG                         GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
EST: gi|32919710|gb|CF024522.1|CF024522
EST:     GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG                         GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
EST: gi|71773498|gb|DR971398.1|DR971398
EST:     GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG                         GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG