1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGCCGCGGCGACCAAGGCGAGGCGCCGCAGCCGCAGCCGCTGGAGTGGCGGTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgtgcgcatgagctcaagatccgctcgatttgtggaggctctgggcttggctgccccgatgccccccccccccccccccccccctgaagtggt...
species | Zea mays |
transcript | GRMZM2G165418_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|19436843|gb|BM953253.1|BM953253
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|4753303|gb|AI657208.1|AI657208
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|211384019|gb|FL015614.1|FL015614
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|78112474|gb|DV530868.1|DV530868
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|149076328|gb|EE164942.2|EE164942
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|50332602|gb|CO527728.1|CO527728
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|149108639|gb|EE292883.2|EE292883
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|148945029|gb|EC890213.2|EC890213
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|211386655|gb|FL015628.1|FL015628
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|9732635|gb|BE511387.1|BE511387
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATTTTGCCAEST: gi|211384022|gb|FL015617.1|FL015617
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|71419454|gb|DR804774.1|DR804774
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|211384023|gb|FL015618.1|FL015618
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|211386652|gb|FL015625.1|FL015625
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|19822590|gb|BQ048614.1|BQ048614
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: TTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGGCAAATCTGGTGACCATCTTGCCAEST: gi|148953679|gb|EC899040.2|EC899040
genomic: TTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGAC-GTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: TTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGGCAAATCTGGTGACCATCTTGCCAEST: gi|149084056|gb|EE173454.2|EE173454
genomic: TTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGAC-GTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|148932282|gb|EC875841.2|EC875841
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|19057676|gb|BM736343.1|BM736343
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|211386656|gb|FL015629.1|FL015629
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|211384020|gb|FL015615.1|FL015615
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGTGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCAEST: gi|211386650|gb|FL015623.1|FL015623
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
EST: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAG TTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
genomic: GTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgt ... ttgttttcagTTGACATCATATCTGCAATTGAATTTGACAAATCTGGTGACCATCTTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCGCGGCGACCAAGGCGAGGCGCCGCAGCCGCAGCCGCTGGAGTGGCGGTTCGCTCAGGTCTTCGGCGAACGTGCCGCGGGCGAAGACGTCCAGGAAGgtacgcacgtgcgcatgagctcaagatccgctcgatttgtggaggctctgggcttggctgccccgatgccccccccccccccccccccccctgaagtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA