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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGATGGCGCAGAAGGAGACTAATGGCAGCAACGGCGATCACATCTCCACCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgtgatctcgactctggatctctatttcactcaccgttagacatgggcttgttcgcgtgttccgaatcctgatttttggtgcccaattgctgtttgatccag

Basic information

species Zea mays
transcript GRMZM2G165357_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 2
CGCGATGGCGCAGAAGGAGACTAATGGCAGCAACGGCGATCACATCTCCACCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgtgatctcgactctggatctctatttcactcaccgttagacatgggcttgttcgcgtgttccgaatcctgatttttggtgcccaattgctgtttgatccag
|| |||||||||||||||| | |||||||||| |  ||   |   | ||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||     |  |  ||      |||| ||   ||  || |||| | || ||| |  | ||||  |  | |    |||||| || |||     |||    |   | |||
CGGGATGGCGCAGAAGGAGGCCAATGGCAGCAGCAACGGGGAGCACACCACCCGCCCGCCGCCGACGCCCTCGCCGCTCCGGTTCTCCAAGTTCTTCCAGgtga-----ttttgccgggatccgatcgctggatc--tcgccgt-atacgtgg-cccgatcgctcgacctgg--tctgattgttcgtgggtgtttgtgtgtgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32829264|gb|CD968942.1|CD968942
EST:     CGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGTGGGCTTCATCGGCTCGTAC
genomic: CGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|149070503|gb|EE158907.2|EE158907
EST:     CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|211182716|gb|FL410032.1|FL410032
EST:     CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|32829447|gb|CD969125.1|CD969125
EST:     CGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGTGGGCTTCATCGGCTCGCAC
genomic: CGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|149082965|gb|EE172201.2|EE172201
EST:     CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|149070980|gb|EE159385.2|EE159385
EST:     CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|32914071|gb|CF018883.1|CF018883
EST:     CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|71444250|gb|DR825300.1|DR825300
EST:     CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
EST: gi|211283078|gb|FL322113.1|FL322113
EST:     CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAG                         GCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC
genomic: CCCGCCCGCCGCCGACCCCCTCGCCCCTCCGCTTCTCCAAGTTCTTTCAGgtgagagcgt ... tttgatccagGCTAACCTGCGGATCCTGGTCACTGGTGGGGCGGGCTTCATCGGCTCGCAC