Sequence
atgc intronic sequence ATGC exonic sequenceTCCCTCGAGGGAATAAGCCCGCCGCGTGAAGCTTCTTCTTGCATCCGAGTGCGGAATCACCTCCAATCTGCCCCTCGGGCCGCCGGCGCCGATGGAGAAGgtgaagaacatgctcaagccgcggccgacgccgcagcagcagctgcgcgagtggcagcgccgcctccgcaacgagtgccgcgtcctcgaccgtcagatcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G165195_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g29630.1 (Oryza sativa), 5'ss of exon 1
TCCCTCGAGGGAATAAGCCCGCCGCG--TGAAGCTTCTTCTTGCATCCGAGTGCGGAATCACCTCCAATCTGCCCCTCGGGCCGCCGGCGCCGATGGAGAAGgtgaagaacatgctcaagccgcggccgacgccgcagcagcagctgcgcgagtggca-gcgccgcctccg-caacgagtgccgcgtcctcgaccgtcagatcc----
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------AAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCA-GCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGgttcgctcccccatctcctcctcctcccccgacgc-gcgacccgaccttcacgcgaggtctttgtctaggtgtgttctcttccatatgatcgggggggggg
upper sequence: GRMZM2G165195_T05 (Zea mays), 5'ss of exon 1
lower sequence: EFJ14961 (Selaginella moellendorffii), 5'ss of exon 1
TCCCTCGAGGGAATAAGCCCGCCGCGTGAAGCTTCTTCTTGCATCCGAGTGCGGAATCACCTCCAATCTGCCCCTCGGGCCGCCGGCGCCGATGGAGA--AGgtgaagaacatgctcaagccgcggccgacg-----ccgcagcagcagctgcgcgagtggcagcgccgcctccgcaacgagtgccgcgtcctcgaccgtcagatcc
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------AAGGGCGTGTTCAAGCC---CAGGCCGACGCCGCAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccctcgtcttctagggtttttcccccgcattcttgctgcgattggctgaattgcgtgagaatttggtttctag------------------
upper sequence: GRMZM2G165195_T05 (Zea mays), 5'ss of exon 1
lower sequence: EFJ38261 (Selaginella moellendorffii), 5'ss of exon 1
TCCCTCGAGGGAATAAGCCCGCCGCGTGAAGCTTCTTCTTGCATCCGAGTGCGGAATCACCTCCAATCTGCCCCTCGGGCCGCCGGCGCCGATGGAGA--AGgtgaagaacatgctcaagccgcggccgacg-----ccgcagcagcagctgcgcgagtggcagcgccgcctccgcaacgagtgccgcgtcctcgaccgtcagatcc
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------AAGGGCGTGTTCAAGCC---CAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccctcgtcttctagggtttttcccccgcattcttgctgcgattggctgaattgcgtgagaatttggtttccag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211495220|gb|FL000400.1|FL000400EST: GCGGATTCACCTCCAATCTGCCCCTCGGGCCGCCGGCGCCGATGGAGAAG ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
genomic: GCGGAATCACCTCCAATCTGCCCCTCGGGCCGCCGGCGCCGATGGAGAAGgtgaagaaca ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCCTCGAGGGAATAAGCCCGCCGCGTGAAGCTTCTTCTTGCATCCGAGTGCGGAATCACCTCCAATCTGCCCCTCGGGCCGCCGGCGCCGATGGAGAAGgtgaagaacatgctcaagccgcggccgacgccgcagcagcagctgcgcgagtggcagcgccgcctccgcaacgagtgccgcgtcctcgaccgtcagatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcgtcc