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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACATGCTCAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccccgaacgcgcccgcatctccttcccttctcgtcccccacatctccttcccctggtctccaagggaactggcgatcgggctcgtgtggacgg...

Basic information

species Zea mays
transcript GRMZM2G165195_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165195_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g29630.1 (Oryza sativa), 5'ss of exon 1
AAGAACATGCTCAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccccgaacgcgcccgcatctccttcccttctcgtcccccacatctccttcccctggtctccaagggaactggcgatcgggctcgtgtggacgg
|||    |||| |||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||| |||||||||||| |   |||| | | |  || | || ||   |   |    |  ||    | |     | | ||||    | |  ||         | ||| | ||  ||
AAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGgttcgctcccccatctcctcctcctcccccgacgcgcgacccgaccttcacgcgaggtctttgtctaggtgtgttctcttccatatgatcgggggggggg

upper sequence: GRMZM2G165195_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ14961 (Selaginella moellendorffii), 5'ss of exon 1
AAGAACATGCTCAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccccgaacgcgcccgcatctccttcccttctcgtcccccacatctccttcccctggtctccaagggaactggcgatcgggctcgtgtggacgg
|||  | || |||||||  |||||||||||||| |||||||||||||||||||||||||||||||| | ||    |||  | | || || ||| || | ||| | | |||            | ||| ||    || |  |||||| ||| || | |  |   |  |  |      ||   ||  || |  |        
AAGGGCGTGTTCAAGCCCAGGCCGACGCCGCAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccct-----------cgtcttctagggtttt--tcccccgcat-tcttgctgcgattggctgaattgcgtgagaatttggtttctag------

upper sequence: GRMZM2G165195_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ38261 (Selaginella moellendorffii), 5'ss of exon 1
AAGAACATGCTCAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccccgaacgcgcccgcatctccttcccttctcgtcccccacatctccttcccctggtctccaagggaactggcgatcgggctcgtgtggacgg
|||  | || |||||||  |||||||||| ||| |||||||||||||||||||||||||||||||| | ||    |||  | | || || ||| || | ||| | | |||            | ||| ||    || |  |||||| ||| || | |  |   |  |  |      ||   ||  || |           
AAGGGCGTGTTCAAGCCCAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccct-----------cgtcttctagggtttt--tcccccgcat-tcttgctgcgattggctgaattgcgtgagaatttggtttccag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211496728|gb|FL175585.1|FL175585
EST:     CAGCGCCGCCTNCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG                         ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAA-CCATCAGGGAGGCTGCCA
genomic: CAGCGCCGCCT-CCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: gi|91052905|gb|EB163323.1|EB163323
EST:     GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG                         ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: gi|148991100|gb|EE032548.2|EE032548
EST:     GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG                         ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: gi|71765372|gb|DR963309.1|DR963309
EST:     GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG                         ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: gi|91054729|gb|EB165147.1|EB165147
EST:     GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG                         ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: gi|76281953|gb|DV021521.1|DV021521
EST:     GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG                         ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
EST: gi|76010551|gb|DT937721.1|DT937721
EST:     GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAG                         ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA
genomic: GCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccc ... gtttttgcagATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCA