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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGTCCAAGGGGATCAAGGCACTGTTCCCCATCCAGGCCACCACTTTCGACCTCGTACTCGACGGCAGCGACTTGGTTGGCCGAGCGCGCACCGGTCAGgtgagaagccgttccgaattgtgattcatttgtttacaaggtgtagtccttattacttggcatgcatagctctttgaattgctagcagactgttcctgct...

Basic information

species Zea mays
transcript GRMZM2G164956_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164956_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g34910.1 (Oryza sativa), 5'ss of exon 1
CAGGTCCAAGGGGATCAAGGCACTGTTCCCCATCCAGGCCACCACTTTCGACCTCGTACTCGACGGCAGCGACTTGGTTGGCCGAGCGCGCACCGGTCAGgtgagaagccgttccgaattgt--gattcatttgtttacaaggtgtagtccttattacttggcatgcatagctctttgaattgctagcagactgttcctgct
|| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||  |||| |||| ||||| |||||||| || ||||||||    |  ||   ||| |  |   ||   | | |   | | |    | ||     | | |||   |  |       |   |  || |||     |   
CAAGTCCAAGGGGATCAAGGCGCTGTTCCCCATCCAGGCCACCACCTTCGATCTCGTCCTCGACGGCCACGACCTGGTCGGCCGCGCGCGCACTGGACAGgtgagtgttccctctcgatttttcgcagcagcagatcatttgatatgaaacgtaagtagtagtatgttcaaattaccatgtgcttttcacacttagtgta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56691642|gb|CX129545.1|CX129545
EST:     ACTCGACGGCAGCGATTTGGTTGGCCGAGCGCGCACCGGTCAG                         GGAAAAACTTTGGCTTTTGTCTTGCCCATATTGGAATCTTTGGTTACCGGG
genomic: ACTCGACGGCAGCGACTTGGTTGGCCGAGCGCGCACCGGTCAGgtgagaagcc ... tttcctacagGGAAAAACTTTGGCTTTTGTCTTGCCCATATTGGAATCTTTGGTTAACGGG