1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGGCTCTTTCAGTTCCATCCATCTTCTCCCTCGTGGCTCTCCTTCCTCTCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttcattccatgtttagatttctccttaattaattccttcatcttcgtcaactgtcatgctactcactactctgacactcacaatccatctcaacttgttaccctacattatgtatgtatgtatgtttatttgttttattccctgctag
species | Zea mays |
transcript | GRMZM2G164916_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA GGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAEST: gi|71775257|gb|DR973135.1|DR973135
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A -------A-AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAEST: gi|211278361|gb|FL132344.1|FL132344
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A -------A-AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAEST: gi|211404678|gb|FL116464.1|FL116464
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA GGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAEST: gi|211278362|gb|FL132345.1|FL132345
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A -------A-AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAEST: gi|211061080|gb|FL205432.1|FL205432
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA GGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAEST: gi|18965054|gb|BM661366.1|BM661366
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
EST: TAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA GGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAEST: gi|211280152|gb|FL132346.1|FL132346
genomic: TAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A -------A-AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAEST: gi|76018661|gb|DT945831.1|DT945831
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A -------A-AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... tccctgctagGGGCCGCAGAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCTCTTTCAGTTCCATCCATCTTCTCCCTCGTGGCTCTCCTTCCTCTCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttcattccatgtttagatttctccttaattaattccttcatcttcgtcaactgtcatgctactcactactctgacactcacaatccatctcaacttgttaccctacattatgtatgtatgtatgtttatttgttttattccctgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA