1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGGCTCTTTCAGTTCCATCCATCTTCTCCCTCGTGGCTCTCCTTCCTCTCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttcattccatgtttagatttctccttaattaattccttcatcttcgtcaactgtcatgctactcactactctgacactcacaatccatctcaacttgttaccctacattatgtatgtatgtatgtttatttgttttattccctgctaggggccgcag
species | Zea mays |
transcript | GRMZM2G164916_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCEST: gi|211278361|gb|FL132344.1|FL132344
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCEST: gi|211278362|gb|FL132345.1|FL132345
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCEST: gi|211404678|gb|FL116464.1|FL116464
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAGGGCCGCAEST: gi|211404678|gb|FL116464.1|FL116464
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A-------Agtgagcttca ... ggg
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAGGGCCGCAEST: gi|211432715|gb|FL449161.1|FL449161
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCG-A-------Agtgagcttca ... ggg
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCEST: gi|9952394|gb|BE638977.1|BE638977
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCEST: gi|71775257|gb|DR973135.1|DR973135
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCEST: gi|76018661|gb|DT945831.1|DT945831
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCCEST: gi|211280152|gb|FL132346.1|FL132346
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
EST: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAA AACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
genomic: TCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttca ... ggggccgcagAACGCCAGATTTTGATTGTTCCACATCTTCTTTCATCTCTGAGGGGTTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCTCTTTCAGTTCCATCCATCTTCTCCCTCGTGGCTCTCCTTCCTCTCTCCCGTAGTCCCGCCGACCCCCCGCGCCGGCCAAGGAAATCAAGCGAAgtgagcttcattccatgtttagatttctccttaattaattccttcatcttcgtcaactgtcatgctactcactactctgacactcacaatccatctcaacttgttaccctacattatgtatgtatgtatgtttatttgttttattccctgctaggggccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA