1 5' 3' | 2 5' 3' | 3 5' 3' |
CGAGCGGCGCACCTACCTGGTGGCCGCCGTGATGTCCAGGCTCGGGGTCACGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAGgtaactttctactgattgcctcttcttttatttgctatgggtagagttgttccagtagtatgtggccatgacgtggccccgcgagtgtgccagtggttgaagcgcaatgctgggaattttacgcctctccatgcactgcag
species | Zea mays |
transcript | GRMZM2G163683_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAG GGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTCCGTCEST: gi|211086400|gb|FL335520.1|FL335520
genomic: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAGgtaactttct ... tgcactgcagGGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTCCGTC
EST: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAG GGCGGCGCGGTCCCGGTGAGCGAGEST: gi|148979517|gb|EE026701.2|EE026701
genomic: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAGgtaactttct ... tgcactgcagGGCGGCGCGGTCCCGGTGAGCGAG
EST: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAG GGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTCCGTCEST: gi|91877187|gb|EB407144.1|EB407144
genomic: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAGgtaactttct ... tgcactgcagGGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTCCGTC
EST: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAG GGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTCCGTCEST: gi|71441112|gb|DR822162.1|DR822162
genomic: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAGgtaactttct ... tgcactgcagGGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTCCGTC
EST: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAG GGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTCCGTC
genomic: CGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAGgtaactttct ... tgcactgcagGGCGGCGCGGTCCCGGTGAGCGAGATGTTCGGCACGTTTGCGCTCTCCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGCGGCGCACCTACCTGGTGGCCGCCGTGATGTCCAGGCTCGGGGTCACGTCCATGGCCGTCGCCGCCGTGTACTATCGCTTCAGCTGGCAAATGGAGgtaactttctactgattgcctcttcttttatttgctatgggtagagttgttccagtagtatgtggccatgacgtggccccgcgagtgtgccagtggttgaagcgcaatgctgggaattttacgcctctccatgcactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG