Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAACCCTTCCATTCACCCGCAGCTCCCATCCTCTCGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatcttgagcccttccggtacattcctgcttcttgaagcgattgctgtctccgtgctcgatcatgttgagttaccgcggcgatgttgagcgcgctg...

Basic information

species Zea mays
transcript GRMZM2G163081_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211402553|gb|FL248948.1|FL248948
EST:     GCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATG                         GGGGGTTTCGTGAAGAC
genomic: GCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatctt ... ctctctccagGGGGGTTTCGTGAAGAC
EST: gi|211510735|gb|FL248624.1|FL248624
EST:     CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATG                         GGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
genomic: CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatctt ... ctctctccagGGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
EST: gi|211089429|gb|FL248703.1|FL248703
EST:     CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATG                         GGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
genomic: CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatctt ... ctctctccagGGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
EST: gi|211227269|gb|FL248874.1|FL248874
EST:     CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATG                         GGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
genomic: CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatctt ... ctctctccagGGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
EST: gi|211096835|gb|FL248747.1|FL248747
EST:     GCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGNAATG                         GGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCA
genomic: GCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAG-AATGgtaagatctt ... ctctctccagGGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCA
EST: gi|211227260|gb|FL248865.1|FL248865
EST:     GCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATG                         GGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTTCCA
genomic: GCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatctt ... ctctctccagGGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTT-CCA
EST: gi|211221073|gb|FL248822.1|FL248822
EST:     CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATG                         GGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
genomic: CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatctt ... ctctctccagGGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
EST: gi|211413275|gb|FL046453.1|FL046453
EST:     CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATG                         GGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA
genomic: CGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatctt ... ctctctccagGGGGGTTTCGTGAAGACTCATAAGACCAATGCGTATTTCAAACGTTTCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAACCCTTCCATTCACCCGCAGCTCCCATCCTCTCGCTCGCCAGGAGAAGCAGCCGCCGTTGCTGCTGCCGCGTCCACAGAATGgtaagatcttgagcccttccggtacattcctgcttcttgaagcgattgctgtctccgtgctcgatcatgttgagttaccgcggcgatgttgagcgcgctg

- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC