Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcgagcacctcgcagtctcgcgccgaattttcttccttggtttcatctcctcgttataaggaatcaccaccggccaccgggatgctgacgcgctgttcgatcgactctcctgcag

Basic information

species Zea mays
transcript GRMZM2G162739_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162739_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S15_200V6.1 (Physcomitrella patens), 5'ss of exon 2
---GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcgagcacctcgcagtctcgcgccgaattttcttccttggtttcatctcctcgt-tataaggaatcaccaccggccaccgggatgctgacgcgct-gttcgatcgactctcctgcag----------------------------------------------------------
    ||    || |  |||||| | |||||||||||||||||||||||||| ||    |||| |    ||  |   |   | | | | |  ||  | ||| | ||    | |  |||     |   ||| |     |||    |||    || | | |  | || | |   |||  ||   ||   | |   |  |     || | | |   ||   | || || |                                                           
GGCACCCAAGGGCGAGAAGACGAACTGGATCATGCACGAGTACCGCCTCGCGGAA---GGCGTCTCAACCTCCAATAACCATCACCGAA--GGGGCTCTCTGCGTgtatgtcctgcattctcctacctcacaa-acattcatgtccgctattacgtattttggtgttttctgaaggactttcgattaacccaactcccctacgttcgatttctcttgtttcgtggaacatccacaactatgttaggacgctccgatctgaacgtaacctacatttggtgatgcag

upper sequence: GRMZM2G162739_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ20531 (Selaginella moellendorffii), 5'ss of exon 1
GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCA---------CGCTCAGGgtaagcggcgagcacctcgcagtctcgcgccgaattttcttccttggtttcatctcctcgttataaggaatcaccaccggccaccgggatgctgacgcgctgttcgatcgactctcctgcag
            ||||||| | |||||||||||||||||||||||||||||   | |||||   |||  |||   ||  || | ||   |||         |||||||||||||  |      | ||   | |||  | |     ||||| ||||    |||    || || |   |||  | |  ||    || ||       |||| |  | | | ||           
---------ATCCAAGACGAATTGGATCATGCACGAGTACCGCCTCGCCGATAGCAGCGCCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaatctccgtcatcgcctca-gtcatggcttctttcttg----cat----tctttgtggtgaa--atcctcgatttcctggtgaaattcgcgtttcttgcttga-----------

upper sequence: GRMZM2G162739_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ28600 (Selaginella moellendorffii), 5'ss of exon 1
GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCA---------CGCTCAGGgtaagcggcgagcacctcgcagtctcgcgccgaattttcttccttggtttcatctcctcgttataaggaatcaccaccggccaccgggatgctgacgcgctgttcgatcgactctcctgcag
            ||||||| | |||||||||||||||||||||||||||||   | |||||   |||  |||   ||  || | ||   |||         |||||||||||||  |      |  |   | |||| | |     ||||| ||||    |||    || || |   |||  | |  ||    || ||       |||| |  | | | ||           
---------ATCCAAGACGAATTGGATCATGCACGAGTACCGCCTCGCCGATAGCAGCGCCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaatctccgccatcgcctcg-gtcatggcttctttcttg----cat----tctttgtggtgaa--atcctcgatttcctggtgaaattcgcgtttcttgcttga-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76012275|gb|DT939445.1|DT939445
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|211145859|gb|FL276332.1|FL276332
EST:     ACGCCGGCGCCCGCGACCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71441475|gb|DR822525.1|DR822525
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71763570|gb|DR961507.1|DR961507
EST:     AGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: AGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|74233460|gb|DT641374.1|DT641374
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|76021737|gb|DT948907.1|DT948907
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGA
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCA-GGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGA
EST: gi|71767541|gb|DR965478.1|DR965478
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|148946737|gb|EC892003.2|EC892003
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|74239028|gb|DT646942.1|DT646942
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71449305|gb|DR830355.1|DR830355
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|76017754|gb|DT944924.1|DT944924
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|76021738|gb|DT948908.1|DT948908
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71767996|gb|DR965933.1|DR965933
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|50338467|gb|CO533593.1|CO533593
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71419569|gb|DR804817.1|DR804817
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|76917565|gb|DV166891.1|DV166891
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71764106|gb|DR962043.1|DR962043
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|78084204|gb|DV512597.1|DV512597
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71427305|gb|DR808355.1|DR808355
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|76017753|gb|DT944923.1|DT944923
EST:     CGGCACGCTCAAG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: CGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|78119738|gb|DV538122.1|DV538122
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|76013135|gb|DT940305.1|DT940305
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71326608|gb|DR799960.1|DR799960
EST:     CGCCGGCGCCCGCGCCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGGTGCTCTGCCCGG-TGTACAACAAGAAGAACGAGTGGG
genomic: CGCCGGCGCCCGCGCCC-GCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGG-TGCTCTGCC-GGCTGTACAACAAGAAGAACGAGTGGG
EST: gi|71767995|gb|DR965932.1|DR965932
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71317793|gb|DR795659.1|DR795659
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCCGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTAC
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTAC
EST: gi|71768239|gb|DR966176.1|DR966176
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71326606|gb|DR799959.1|DR799959
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|78111829|gb|DV530226.1|DV530226
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|76917564|gb|DV166890.1|DV166890
EST:     CCGGCACCGGCACGCTCAGG                         TTGGAGGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: CCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71768240|gb|DR966177.1|DR966177
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71760447|gb|DR958384.1|DR958384
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|148990362|gb|EE031926.2|EE031926
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71445054|gb|DR826104.1|DR826104
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|148946738|gb|EC892004.2|EC892004
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|71764432|gb|DR962369.1|DR962369
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|74234187|gb|DT642101.1|DT642101
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
EST: gi|78111615|gb|DV530012.1|DV530012
EST:     ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGG                         TTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG
genomic: ACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 36 (upstream exon), 14 (downstream exon)
Score: 1

GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGACGCAGCAGCAGCAGGAGAAGAAGCAGAATCAGAAGCAAATGGAGT


Block sizes: 48 (upstream exon), 33 (downstream exon)
Score: 11

GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGACGCAGCAGCAGCAGGAGAAGAAGCAGAATCAGAAGCAAATGGAGT


Block sizes: 46 (upstream exon), 39 (downstream exon)
Score: 5

GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGACGCAGCAGCAGCAGGAGAAGAAGCAGAATCAGAAGCAAATGGAGT


Block sizes: 45 (upstream exon), 28 (downstream exon)
Score: 6

GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcg ... tctcctgcagTTGGATGACTGGGTGCTCTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGACGCAGCAGCAGCAGGAGAAGAAGCAGAATCAGAAGCAAATGGAGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGCGCGGGGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCGACGCCGGCGCCCGCGCCCGCGCCAGGAAGCCCGGCACCGGCACGCTCAGGgtaagcggcgagcacctcgcagtctcgcgccgaattttcttccttggtttcatctcctcgttataaggaatcaccaccggccaccgggatgctgacgcgctgttcgatcgactctcctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - -CGCCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGGCACCG