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CCACCACCCCCGCCTCTATTTCTTTAGCATCGCCGCCCCCAAGCCATTTCTCTCCAGCATCGCCGCCCCCCCTCTCCGCCTCAAGGCTCTCCTCTCGGAGgtacgtgcgcgcccctcagttccgatctagccgttctatggggaatcacgagcgtttctgttggtacattggcctcactcaaggccgcttgcgtgttctt...
species | Zea mays |
transcript | GRMZM2G162461_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTCCGCCTCAAGGCTCTCCTCTCGGAG GTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAACEST: gi|78091381|gb|DV519755.1|DV519755
genomic: TCTCCGCCTCAAGGCTCTCCTCTCGGAGgtacgtgcgc ... cttttatcagGTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAAC
EST: TCTCCGCCTCAAGGCTCTCCTCTCGGAG GTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAACEST: gi|211291581|gb|FL347248.1|FL347248
genomic: TCTCCGCCTCAAGGCTCTCCTCTCGGAGgtacgtgcgc ... cttttatcagGTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAAC
EST: TCTCCGCCTCAAGGCTCTCCTCTCGGAG GTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAACEST: gi|22546857|gb|BU099168.1|BU099168
genomic: TCTCCGCCTCAAGGCTCTCCTCTCGGAGgtacgtgcgc ... cttttatcagGTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAAC
EST: TCTCCTCT-GGAG GTCTGAT-GGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAACEST: gi|6695982|gb|AW289090.1|AW289090
genomic: TCTCCTCTCGGAGgtacgtgcgc ... cttttatcagGTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAAC
EST: CTCTCCTCTCGGAG GTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAACEST: gi|91050816|gb|EB161234.1|EB161234
genomic: CTCTCCTCTCGGAGgtacgtgcgc ... cttttatcagGTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAAC
EST: TCTCCGCCTCAAGGCTCTCCTCTCGGAG GTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAACEST: gi|21390198|gb|BQ528247.1|BQ528247
genomic: TCTCCGCCTCAAGGCTCTCCTCTCGGAGgtacgtgcgc ... cttttatcagGTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAAC
EST: CCGCCTC-AGGCTCTCCTCTCGGAG GTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAAC
genomic: CCGCCTCAAGGCTCTCCTCTCGGAGgtacgtgcgc ... cttttatcagGTCTGATAGGCAACCCAATAATGGCAGAAGTCCTATCAGGATCTCATGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCACCCCCGCCTCTATTTCTTTAGCATCGCCGCCCCCAAGCCATTTCTCTCCAGCATCGCCGCCCCCCCTCTCCGCCTCAAGGCTCTCCTCTCGGAGgtacgtgcgcgcccctcagttccgatctagccgttctatggggaatcacgagcgtttctgttggtacattggcctcactcaaggccgcttgcgtgttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgcccc